Strain identifier
BacDive ID: 161205
Type strain: 
Species: Natronolimnobius baerhuensis
Strain history: T. Itoh and P. Zhou IHC-005.
NCBI tax ID(s): 1295126 (strain), 253108 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161205
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natronolimnobius baerhuensis JCM 12253 is a mesophilic archaeon that was isolated from Baerhu Soda Lake in Inner Mongolia Autonomous Region.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 253108 | species |
| 1295126 | strain |
strain history
- @ref: 67770
- history: T. Itoh and P. Zhou IHC-005.
doi: 10.13145/bacdive161205.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Natrialbaceae
- genus: Natronolimnobius
- species: Natronolimnobius baerhuensis
- full scientific name: Natronolimnobius baerhuensis Itoh et al. 2005
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Natronolimnobius
species: Natronolimnobius baerhuensis
full scientific name: Natronolimnobius baerhuensis Itoh et al. 2005
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 90.2
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 94.5
observation
- @ref: 67770
- observation: quinones: MK-8 and MK-8(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Baerhu Soda Lake in Inner Mongolia Autonomous Region
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_188790.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_69642;97_90444;98_122930;99_188790&stattab=map
- Last taxonomy: Natronolimnobius baerhuensis subclade
- 16S sequence: AB125106
- Sequence Identity:
- Total samples: 2
- aquatic counts: 2
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Natronolimnobius baerhuensis gene for 16S rRNA, partial sequence, strain: IHC-005 | AB125106 | 1435 | nuccore | 253108 |
| 124043 | Natronolimnobius baerhuensis gene for 16S rRNA, complete sequence, strain: JCM 12253. | AB663471 | 1471 | nuccore | 253108 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natronolimnobius baerhuensis JCM 12253 | 2740891997 | draft | img | 1295126 |
| 67770 | Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597 | GCA_001316185 | contig | ncbi | 1295126 |
| 67770 | Natronolimnobius baerhuensis CGMCC 1.3597 | GCA_002177135 | contig | ncbi | 253108 |
| 66792 | Natronolimnobius baerhuensis strain CGMCC 1.3597 | 253108.4 | wgs | patric | 253108 |
| 66792 | Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597 | 1295126.4 | wgs | patric | 1295126 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 60.1 | genome sequence analysis |
| 67770 | 59.2 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 90.2 |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 62.6 |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94.5 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 84.9 |
External links
@ref: 67770
culture collection no.: JCM 12253, CGMCC 1.3597
straininfo link
- @ref: 113275
- straininfo: 231867
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15841343 | Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China. | Itoh T, Yamaguchi T, Zhou P, Takashina T | Extremophiles | 10.1007/s00792-004-0426-z | 2004 | Archaea/*classification/*physiology, Base Composition, China, Chromatography, Thin Layer, DNA/chemistry, DNA, Archaeal, DNA, Ribosomal, Genes, rRNA, Glycolipids/chemistry, Hydrogen-Ion Concentration, Lipids/chemistry, Phenotype, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/chemistry, Sodium Chloride/pharmacology, Species Specificity, Temperature, Water | Phenotype |
| Genetics | 28935723 | Draft Genome Sequence of Natronolimnobius baerhuensis CGMCC 1.3597(T), an Aerobic Haloalkaliphilic Archaeon Isolated from a Soda Lake. | Guo X, Liao Z, Yan Y, Holtzapple M, Hu Q, Zhao B | Genome Announc | 10.1128/genomeA.00710-17 | 2017 | Phylogeny |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113275 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID231867.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |