Strain identifier
BacDive ID: 161153
Type strain: 
Species: Bifidobacterium longum subsp. longum
Strain history: Y. Benno B-44.
NCBI tax ID(s): 1679 (subspecies)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161153
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium longum subsp. longum JCM 11342 is an anaerobe, mesophilic bacterium that was isolated from Infant feces.
NCBI tax id
- NCBI tax id: 1679
- Matching level: subspecies
strain history
- @ref: 67770
- history: Y. Benno B-44.
doi: 10.13145/bacdive161153.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium longum subsp. longum
- full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium longum subsp. longum
full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.203 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.717
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.997 |
| 69481 | no | 99 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Infant feces
taxonmaps
- @ref: 69479
- File name: preview.99_48.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_39;97_41;98_45;99_48&stattab=map
- Last taxonomy: Bifidobacterium longum subclade
- 16S sequence: LC306854
- Sequence Identity:
- Total samples: 207055
- soil counts: 1795
- aquatic counts: 7450
- animal counts: 197025
- plant counts: 785
Sequence information
16S sequences
- @ref: 67770
- description: Bifidobacterium longum subsp. longum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11342
- accession: LC306854
- length: 1464
- database: ena
- NCBI tax ID: 1679
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium longum subsp. longum JCM 11342 | GCA_017357325 | complete | ncbi | 1679 |
| 66792 | Bifidobacterium longum subsp. longum strain JCM 11342 | 1679.305 | complete | patric | 1679 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| flagellated | no | 97.051 | no |
| gram-positive | yes | 91.17 | no |
| anaerobic | yes | 98.119 | no |
| aerobic | no | 96.995 | no |
| halophile | no | 78.716 | no |
| spore-forming | no | 95.977 | no |
| thermophile | no | 97.041 | yes |
| glucose-util | yes | 85.568 | no |
| motile | no | 94.043 | no |
| glucose-ferment | yes | 83.32 | no |
External links
@ref: 67770
culture collection no.: JCM 11342
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |