Strain identifier
BacDive ID: 161088
Type strain:
Species: Paenibacillus sp.
Strain history: M. Ohkuma SM-XY60.
NCBI tax ID(s): 1236974 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161088
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. JCM 10914 is a mesophilic bacterium that was isolated from Gut of the soil-feeding termite Sinocapritermes mushae.
NCBI tax id
- NCBI tax id: 1236974
- Matching level: species
strain history
- @ref: 67770
- history: M. Ohkuma SM-XY60.
doi: 10.13145/bacdive161088.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
enzymes
- @ref: 67770
- value: Xylanase
- ec: 3.2.1.8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gut of the soil-feeding termite Sinocapritermes mushae
- host species: Sinocapritermes mushae
- geographic location: Okinawa
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_7409.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3465;97_4250;98_5431;99_7409&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: AB046581
- Sequence Identity:
- Total samples: 678
- soil counts: 432
- aquatic counts: 37
- animal counts: 92
- plant counts: 117
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus sp. SM-XY60 gene for 16S rRNA, partial sequence
- accession: AB046581
- length: 1375
- database: ena
- NCBI tax ID: 1236974
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus sp. JCM 10914 | GCA_001315105 | contig | ncbi | 1236974 |
66792 | Paenibacillus sp. JCM 10914 | 1236974.5 | wgs | patric | 1236974 |
66792 | Paenibacillus sp. JCM 10914 | 1236974.4 | wgs | patric | 1236974 |
66792 | Paenibacillus sp. JCM 10914 | 2576861701 | draft | img | 1236974 |
67770 | Paenibacillus sp. JCM 10914 | GCA_000509425 | contig | ncbi | 1236974 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 48.7-49.7 | high performance liquid chromatography (HPLC) |
67770 | 48.6 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 90.546 | no |
gram-positive | yes | 77.77 | no |
anaerobic | no | 97.925 | no |
aerobic | yes | 83.87 | no |
halophile | no | 77.24 | no |
spore-forming | yes | 96.194 | no |
thermophile | no | 98.972 | no |
glucose-util | yes | 88.436 | no |
flagellated | yes | 78.498 | no |
glucose-ferment | no | 86.104 | no |
External links
@ref: 67770
culture collection no.: JCM 10914
literature
- topic: Genetics
- Pubmed-ID: 24459258
- title: Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite.
- authors: Ohkuma M, Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M
- journal: Genome Announc
- DOI: 10.1128/genomeA.01144-13
- year: 2014
- topic2: Phylogeny
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |