Strain identifier

BacDive ID: 161088

Type strain: No

Species: Paenibacillus sp.

Strain history: M. Ohkuma SM-XY60.

NCBI tax ID(s): 1236974 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161088

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Paenibacillus sp. JCM 10914 is a mesophilic bacterium that was isolated from Gut of the soil-feeding termite Sinocapritermes mushae.

NCBI tax id

  • NCBI tax id: 1236974
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Ohkuma SM-XY60.

doi: 10.13145/bacdive161088.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus sp.
  • full scientific name: Paenibacillus Ash et al. 1994
  • synonyms

    • @ref: 20215
    • synonym: Aerobacillus

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus sp.

full scientific name: Paenibacillus sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

enzymes

  • @ref: 67770
  • value: Xylanase
  • ec: 3.2.1.8

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Gut of the soil-feeding termite Sinocapritermes mushae
  • host species: Sinocapritermes mushae
  • geographic location: Okinawa
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_7409.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3465;97_4250;98_5431;99_7409&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: AB046581
  • Sequence Identity:
  • Total samples: 678
  • soil counts: 432
  • aquatic counts: 37
  • animal counts: 92
  • plant counts: 117

Sequence information

16S sequences

  • @ref: 67770
  • description: Paenibacillus sp. SM-XY60 gene for 16S rRNA, partial sequence
  • accession: AB046581
  • length: 1375
  • database: ena
  • NCBI tax ID: 1236974

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus sp. JCM 10914GCA_001315105contigncbi1236974
66792Paenibacillus sp. JCM 109141236974.5wgspatric1236974
66792Paenibacillus sp. JCM 109141236974.4wgspatric1236974
66792Paenibacillus sp. JCM 109142576861701draftimg1236974
67770Paenibacillus sp. JCM 10914GCA_000509425contigncbi1236974

GC content

@refGC-contentmethod
6777048.7-49.7high performance liquid chromatography (HPLC)
6777048.6genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.546no
gram-positiveyes77.77no
anaerobicno97.925no
aerobicyes83.87no
halophileno77.24no
spore-formingyes96.194no
thermophileno98.972no
glucose-utilyes88.436no
flagellatedyes78.498no
glucose-fermentno86.104no

External links

@ref: 67770

culture collection no.: JCM 10914

literature

  • topic: Genetics
  • Pubmed-ID: 24459258
  • title: Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite.
  • authors: Ohkuma M, Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.01144-13
  • year: 2014
  • topic2: Phylogeny

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/