Strain identifier
BacDive ID: 16106
Type strain:
Species: Streptomyces virginiae
Strain Designation: NA 255-88 (M808)
Strain history: KCC S-0425 <-- IFO 12827 <-- SAJ <-- ISP 5094 <-- T. Oliver NA255-B8.
NCBI tax ID(s): 1961 (species)
General
@ref: 9306
BacDive-ID: 16106
DSM-Number: 40094
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces virginiae NA 255-88 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1961
- Matching level: species
strain history
@ref | history |
---|---|
9306 | <- E.B. Shirling, ISP <- T. Oliver, NA 255-B8 |
67770 | KCC S-0425 <-- IFO 12827 <-- SAJ <-- ISP 5094 <-- T. Oliver NA255-B8. |
doi: 10.13145/bacdive16106.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces virginiae
- full scientific name: Streptomyces virginiae Grundy et al. 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces cinnamonensis
@ref: 9306
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces virginiae
full scientific name: Streptomyces virginiae Grundy et al. 1952 emend. Nouioui et al. 2018
strain designation: NA 255-88 (M808)
type strain: yes
Morphology
multimedia
- @ref: 9306
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40094.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9306 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9306 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9306 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9306 | actithiazic acid |
9306 | cycloserine |
metabolite production
- @ref: 67770
- metabolite: mycobacidin
- production: yes
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
9306 | soil | ||||
67770 | Soil | near Roanoke, VA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_163.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_144;99_163&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: JN201950
- Sequence Identity:
- Total samples: 26399
- soil counts: 19336
- aquatic counts: 1680
- animal counts: 1702
- plant counts: 3681
Safety information
risk assessment
- @ref: 9306
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces virginiae strain CBS314.55 16S ribosomal RNA gene, partial sequence | JN201950 | 1407 | ena | 1961 |
20218 | Streptomyces virginiae DNA for 16S rRNA, strain IFO 12827 | D85123 | 1514 | ena | 1961 |
20218 | Streptomyces virginiae DNA for 16S rRNA, strain IFO 3729 | D85119 | 1514 | ena | 1961 |
20218 | Streptomyces virginiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4425 | D44137 | 120 | ena | 1961 |
20218 | Streptomyces virginiae gene for 16S rRNA, partial sequence, strain: NBRC 3729 | AB184797 | 1464 | ena | 1961 |
9306 | Streptomyces virginiae gene for 16S rRNA, partial sequence, strain: NBRC 12827 | AB184175 | 1468 | ena | 1961 |
Genome sequences
- @ref: 67770
- description: Streptomyces virginiae NRRL ISP-5094
- accession: GCA_000720455
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1961
GC content
- @ref: 67770
- GC-content: 72.4
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.584 | no |
flagellated | no | 97.601 | no |
gram-positive | yes | 87.519 | no |
anaerobic | no | 98.943 | no |
halophile | no | 95.909 | no |
spore-forming | yes | 93.169 | no |
thermophile | no | 99.229 | no |
glucose-util | yes | 89.793 | no |
aerobic | yes | 87.496 | no |
glucose-ferment | no | 88.861 | no |
External links
@ref: 9306
culture collection no.: DSM 40094, ATCC 19817, CBS 291.60, CBS 570.68, ETH 14322, IFO 12827, IFO 3729, IMRU 3651, ISP 5094, JCM 4425, NBRC 12827, NBRC 3729, NRRL B-1446, RIA 1097, BCRC 12069, CGMCC 4.1530, KCTC 1747, MTCC 4730, NRRL ISP-5094, VKM Ac-1218
straininfo link
- @ref: 85172
- straininfo: 386959
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 12375099 | Purification and characterization of an epsilon-poly-L-lysine-degrading enzyme from an epsilon-poly-L-lysine-producing strain of Streptomyces albulus. | Kito M, Takimoto R, Yoshida T, Nagasawa T | Arch Microbiol | 10.1007/s00203-002-0459-6 | 2002 | Aminopeptidases/chemistry/*isolation & purification/metabolism, Chromatography, High Pressure Liquid, Molecular Weight, Polylysine/*metabolism, Streptomyces/*enzymology/isolation & purification, Substrate Specificity | Phylogeny |
Phylogeny | 22421918 | Streptomyces manipurensis sp. nov., a novel actinomycete isolated from a limestone deposit site in Manipur, India. | Nimaichand S, Zhu WY, Yang LL, Ming H, Nie GX, Tang SK, Ningthoujam DS, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9720-4 | 2012 | Base Composition, *Calcium Carbonate, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification, Vitamin K 2/analysis | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9306 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40094) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40094 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
85172 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID386959.1 | StrainInfo: A central database for resolving microbial strain identifiers |