Strain identifier

BacDive ID: 161018

Type strain: No

Species: Thermus thermophilus

Strain history: F. Inagaki and S. Ogata strain TMY.

NCBI tax ID(s): 274 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161018

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Thermus thermophilus JCM 10668 is a thermophilic bacterium that was isolated from Silica scale from the Otake geothermal power plant.

NCBI tax id

  • NCBI tax id: 274
  • Matching level: species

strain history

  • @ref: 67770
  • history: F. Inagaki and S. Ogata strain TMY.

doi: 10.13145/bacdive161018.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Thermales
  • family: Thermaceae
  • genus: Thermus
  • species: Thermus thermophilus
  • full scientific name: Thermus thermophilus (ex Oshima and Imahori 1974) Manaia et al. 1995
  • synonyms

    • @ref: 20215
    • synonym: Thermus thermophilus

@ref: 67770

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Thermales

family: Thermaceae

genus: Thermus

species: Thermus thermophilus

full scientific name: Thermus thermophilus Manaia et al. 1995

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 75
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Silica scale from the Otake geothermal power plant
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_308.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_213;97_232;98_261;99_308&stattab=map
  • Last taxonomy: Thermus
  • 16S sequence: AB020888
  • Sequence Identity:
  • Total samples: 12457
  • soil counts: 1743
  • aquatic counts: 3381
  • animal counts: 6610
  • plant counts: 723

Sequence information

16S sequences

  • @ref: 67770
  • description: Thermus thermophilus gene for 16S ribosomal RNA
  • accession: AB020888
  • length: 1515
  • database: ena
  • NCBI tax ID: 274

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermus thermophilus strain TMY274.18plasmidpatric274
66792Thermus thermophilus strain TMY274.14completepatric274
66792Thermus thermophilus strain TMY274.51completepatric274
66792Thermus thermophilus strain TMY274.77completepatric274
66792Thermus thermophilus strain TMY274.70completepatric274
66792Thermus thermophilus strain TMY274.58completepatric274

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno86.968no
gram-positiveno97.308no
anaerobicno93.728no
halophileno87.126no
spore-formingno93.329no
glucose-utilyes84.482no
aerobicyes75.539no
flagellatedno97.998no
thermophileyes100yes
glucose-fermentno86.069no

External links

@ref: 67770

culture collection no.: JCM 10668

straininfo link

  • @ref: 113151
  • straininfo: 343824

literature

  • topic: Genetics
  • Pubmed-ID: 28153912
  • title: Complete Genome Sequence of Thermus thermophilus TMY, Isolated from a Geothermal Power Plant.
  • authors: Fujino Y, Nagayoshi Y, Ohshima T, Ogata S, Doi K
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.01596-16
  • year: 2017
  • topic2: Phylogeny

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113151Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID343824.1