Strain identifier
BacDive ID: 161018
Type strain:
Species: Thermus thermophilus
Strain history: F. Inagaki and S. Ogata strain TMY.
NCBI tax ID(s): 274 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161018
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Thermus thermophilus JCM 10668 is a thermophilic bacterium that was isolated from Silica scale from the Otake geothermal power plant.
NCBI tax id
- NCBI tax id: 274
- Matching level: species
strain history
- @ref: 67770
- history: F. Inagaki and S. Ogata strain TMY.
doi: 10.13145/bacdive161018.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Thermus
- species: Thermus thermophilus
- full scientific name: Thermus thermophilus (ex Oshima and Imahori 1974) Manaia et al. 1995
synonyms
- @ref: 20215
- synonym: Thermus thermophilus
@ref: 67770
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Thermus
species: Thermus thermophilus
full scientific name: Thermus thermophilus Manaia et al. 1995
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 75
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Silica scale from the Otake geothermal power plant
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_308.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_213;97_232;98_261;99_308&stattab=map
- Last taxonomy: Thermus
- 16S sequence: AB020888
- Sequence Identity:
- Total samples: 12457
- soil counts: 1743
- aquatic counts: 3381
- animal counts: 6610
- plant counts: 723
Sequence information
16S sequences
- @ref: 67770
- description: Thermus thermophilus gene for 16S ribosomal RNA
- accession: AB020888
- length: 1515
- database: ena
- NCBI tax ID: 274
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thermus thermophilus strain TMY | 274.18 | plasmid | patric | 274 |
66792 | Thermus thermophilus strain TMY | 274.14 | complete | patric | 274 |
66792 | Thermus thermophilus strain TMY | 274.51 | complete | patric | 274 |
66792 | Thermus thermophilus strain TMY | 274.77 | complete | patric | 274 |
66792 | Thermus thermophilus strain TMY | 274.70 | complete | patric | 274 |
66792 | Thermus thermophilus strain TMY | 274.58 | complete | patric | 274 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 86.968 | no |
gram-positive | no | 97.308 | no |
anaerobic | no | 93.728 | no |
halophile | no | 87.126 | no |
spore-forming | no | 93.329 | no |
glucose-util | yes | 84.482 | no |
aerobic | yes | 75.539 | no |
flagellated | no | 97.998 | no |
thermophile | yes | 100 | yes |
glucose-ferment | no | 86.069 | no |
External links
@ref: 67770
culture collection no.: JCM 10668
straininfo link
- @ref: 113151
- straininfo: 343824
literature
- topic: Genetics
- Pubmed-ID: 28153912
- title: Complete Genome Sequence of Thermus thermophilus TMY, Isolated from a Geothermal Power Plant.
- authors: Fujino Y, Nagayoshi Y, Ohshima T, Ogata S, Doi K
- journal: Genome Announc
- DOI: 10.1128/genomeA.01596-16
- year: 2017
- topic2: Phylogeny
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113151 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID343824.1 |