Strain identifier
BacDive ID: 160960
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka PNF-5-10.
NCBI tax ID(s): 1624 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160960
keywords: genome sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius JCM 1047 is a mesophilic bacterium that was isolated from Swine intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka PNF-5-10.
doi: 10.13145/bacdive160960.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.396 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.952 |
| 69481 | no | 96 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Swine intestine
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1047 | GCA_002079425 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1047 | 1624.50 | wgs | patric | 1624 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 96 | no |
| flagellated | no | 98.53 | no |
| gram-positive | yes | 95.504 | no |
| anaerobic | no | 67.982 | no |
| aerobic | no | 97.342 | no |
| halophile | yes | 85.161 | no |
| spore-forming | no | 95.104 | no |
| thermophile | no | 98.177 | no |
| glucose-util | yes | 92.95 | no |
| motile | no | 96.54 | no |
| glucose-ferment | yes | 86.741 | no |
External links
@ref: 67770
culture collection no.: JCM 1047, KCTC 3157
straininfo link
- @ref: 113124
- straininfo: 63143
literature
- topic: Phylogeny
- Pubmed-ID: 18398189
- title: Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris).
- authors: Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Dominguez L, Fernandez-Garayzabal JF
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65372-0
- year: 2008
- mesh: Animals, Genes, Bacterial, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Whales/*microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113124 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63143.1 |