Strain identifier
BacDive ID: 160955
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka ChN-10-5-1.
NCBI tax ID(s): 1624 (species)
version 7.1 (current version)
General
@ref: 67770
BacDive-ID: 160955
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius JCM 1044 is a mesophilic bacterium that was isolated from Human intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history: T. Mitsuoka ChN-10-5-1.
doi: 10.13145/bacdive160955.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 91.268
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.008
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 91.672
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human intestine
taxonmaps
- @ref: 69479
- File name: preview.99_595.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_379;97_427;98_487;99_595&stattab=map
- Last taxonomy: Ligilactobacillus salivarius
- 16S sequence: LC260013
- Sequence Identity:
- Total samples: 75779
- soil counts: 1629
- aquatic counts: 3859
- animal counts: 69457
- plant counts: 834
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus salivarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 1044
- accession: LC260013
- length: 1503
- database: ena
- NCBI tax ID: 1624
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1044 | GCA_002079485 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1044 | 1624.53 | wgs | patric | 1624 |
| 66792 | Bacteroidetes bacterium BD_4 | GCA_005884665 | scaffold | patric | 1898104 |
External links
@ref: 67770
culture collection no.: JCM 1044
literature
- topic: Pathogenicity
- Pubmed-ID: 16484210
- title: Mechanism of growth inhibition by free bile acids in lactobacilli and bifidobacteria.
- authors: Kurdi P, Kawanishi K, Mizutani K, Yokota A
- journal: J Bacteriol
- DOI: 10.1128/JB.188.5.1979-1986.2006
- year: 2006
- mesh: Bifidobacterium/*drug effects/metabolism, Bile Acids and Salts/*pharmacology, Cell Membrane/drug effects/metabolism, Chenodeoxycholic Acid/pharmacology, Cholic Acid/pharmacology, Deoxycholic Acid/pharmacology, Hydrogen-Ion Concentration, Lactobacillus/*drug effects/metabolism, Membrane Potentials, Microbial Sensitivity Tests
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |