Strain identifier

BacDive ID: 160952

Type strain: No

Species: Clostridium scindens

Strain history: F. Takamine I-10.

NCBI tax ID(s): 29347 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 160952

keywords: 16S sequence, Bacteria, mesophilic

description: Clostridium scindens JCM 10421 is a mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 29347
  • Matching level: species

strain history

  • @ref: 67770
  • history: F. Takamine I-10.

doi: 10.13145/bacdive160952.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium scindens
  • full scientific name: Clostridium scindens Morris et al. 1985

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium scindens

full scientific name: Clostridium scindens Morris et al. 1985

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1033.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_592;97_693;98_808;99_1033&stattab=map
  • Last taxonomy: [Clostridium] scindens subclade
  • 16S sequence: LC145582
  • Sequence Identity:
  • Total samples: 80205
  • soil counts: 346
  • aquatic counts: 837
  • animal counts: 78797
  • plant counts: 225

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Clostridium scindens 16S rRNA, partial sequence, strain:JCM 10421 I-10AB0207301459ena29347
67770[Clostridium] scindens gene for 16S ribosomal RNA, partial sequence, strain: JCM 10421LC1455821484ena29347

External links

@ref: 67770

culture collection no.: JCM 10421

straininfo link

  • @ref: 113117
  • straininfo: 88190

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113117Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID88190.1