Strain identifier
BacDive ID: 160952
Type strain:
Species: Clostridium scindens
Strain history: F. Takamine I-10.
NCBI tax ID(s): 29347 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160952
keywords: 16S sequence, Bacteria, mesophilic
description: Clostridium scindens JCM 10421 is a mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 29347
- Matching level: species
strain history
- @ref: 67770
- history: F. Takamine I-10.
doi: 10.13145/bacdive160952.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium scindens
- full scientific name: Clostridium scindens Morris et al. 1985
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium scindens
full scientific name: Clostridium scindens Morris et al. 1985
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1033.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_592;97_693;98_808;99_1033&stattab=map
- Last taxonomy: [Clostridium] scindens subclade
- 16S sequence: LC145582
- Sequence Identity:
- Total samples: 80205
- soil counts: 346
- aquatic counts: 837
- animal counts: 78797
- plant counts: 225
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Clostridium scindens 16S rRNA, partial sequence, strain:JCM 10421 I-10 | AB020730 | 1459 | ena | 29347 |
67770 | [Clostridium] scindens gene for 16S ribosomal RNA, partial sequence, strain: JCM 10421 | LC145582 | 1484 | ena | 29347 |
External links
@ref: 67770
culture collection no.: JCM 10421
straininfo link
- @ref: 113117
- straininfo: 88190
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113117 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID88190.1 |