Strain identifier
BacDive ID: 160862
Type strain:
Species: Lactobacillus helveticus
Strain history: T. Mitsuoka S1-20 <-- ISL <-- ATCC 10797 <-- R. P. Tittsler V80.
NCBI tax ID(s): 1587 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160862
keywords: genome sequence, Bacteria, mesophilic
description: Lactobacillus helveticus JCM 1007 is a mesophilic bacterium that was isolated from Swiss cheese starter.
NCBI tax id
- NCBI tax id: 1587
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka S1-20 <-- ISL <-- ATCC 10797 <-- R. P. Tittsler V80.
doi: 10.13145/bacdive160862.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus helveticus
- full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980)
synonyms
@ref synonym 20215 Thermobacterium helveticum 20215 Lactobacillus suntoryeus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus helveticus
full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.392 | |
69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.998 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Swiss cheese starter
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus helveticus ATCC 10797 | GCA_019455935 | contig | ncbi | 1587 |
66792 | Lactobacillus helveticus JCM 1007 | GCA_015698185 | contig | ncbi | 1587 |
66792 | Lactobacillus helveticus strain ATCC 10797 | 1587.727 | wgs | patric | 1587 |
66792 | Lactobacillus helveticus strain JCM 1007 | 1587.660 | wgs | patric | 1587 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 95.92 | no |
gram-positive | yes | 94.11 | no |
anaerobic | yes | 60.873 | no |
aerobic | no | 98.523 | no |
halophile | yes | 88.481 | no |
spore-forming | no | 94.805 | no |
thermophile | no | 99.312 | no |
glucose-util | yes | 91.289 | no |
flagellated | no | 98.281 | no |
glucose-ferment | yes | 90.514 | no |
External links
@ref: 67770
culture collection no.: JCM 1007, ATCC 10797, LMG 11474
straininfo link
- @ref: 113049
- straininfo: 13704
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
113049 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID13704.1 |