Strain identifier
BacDive ID: 160832
Type strain: 
Species: Nitratiruptor labii
Strain Designation: HRV44
Strain history: S. Mino; Hokkaido Univ., Japan; HRV44.
NCBI tax ID(s): 2706014 (species)
version 9.2 (current version)
General
@ref: 67769
BacDive-ID: 160832
DSM-Number: 111345
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Nitratiruptor labii HRV44 is a thermophilic bacterium that was isolated from deep-sea hydrothermal vent.
NCBI tax id
- NCBI tax id: 2706014
- Matching level: species
strain history
- @ref: 67770
- history: S. Mino; Hokkaido Univ., Japan; HRV44.
doi: 10.13145/bacdive160832.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Epsilonproteobacteria, not assigned to order
- family: Nitratiruptoraceae
- genus: Nitratiruptor
- species: Nitratiruptor labii
- full scientific name: Nitratiruptor labii Fukushi et al. 2021
synonyms
- @ref: 20215
- synonym: Nitrosophilus labii
@ref: 67769
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Epsilonproteobacteria, not assigned to order
family: Nitratiruptoraceae
genus: Nitrosophilus
species: Nitrosophilus labii
full scientific name: Nitrosophilus labii Shiotani et al. 2020
strain designation: HRV44
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 67769 | MMJHS MEDIUM (DSMZ Medium 1721) | yes | https://mediadive.dsmz.de/medium/1721 | Name: MMJHS MEDIUM (DSMZ Medium 1721) Composition: Sulfur 10.0 g/l MgCl2 x 6 H2O 4.2 g/l Na2S2O3 x 5 H2O 1.0 g/l NaHCO3 1.0 g/l NaNO3 1.0 g/l KCl 0.5 g/l NH4Cl 0.25 g/l K2HPO4 0.14 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x n H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l Na2WO4 x 2 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Na2SeO3 x 5 H2O 0.0005 g/l NiCl2 x 6 H2O 0.00025 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l AlK(SO4)2 2e-05 g/l Distilled water |
| 67769 | NITRATIRUPTOR AND NITRATIFACTOR MEDIUM (DSMZ Medium 1024) | yes | https://mediadive.dsmz.de/medium/1024 | Name: NITRATIRUPTOR AND NITRATIFRACTOR MEDIUM (DSMZ Medium 1024) Composition: MgCl2 x 6 H2O 418.0 g/l KCl 33.0 g/l NH4Cl 25.0 g/l K2HPO4 14.0 g/l Sulfur powder 3.0 g/l MgSO4 x 7 H2O 3.0 g/l C6H9NO6 1.5 g/l Fe(NH4)2(SO4)2 x 6 H2O 1.0 g/l NaCl 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l NaHCO3 1.0 g/l NaNO3 1.0 g/l MnSO4 x 2 H2O 0.5 g/l CoSO4 x 7 H2O 0.18 g/l ZnSO4 x 7 H2O 0.18 g/l FeSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.1 g/l NiCl2 x 6 H2O 0.025 g/l AlK(SO4)2 x 12 H2O 0.02 g/l Nitrilotriacetic acid 0.015 g/l Na2MoO4 x 2 H2O 0.01 g/l CuSO4 x 5 H2O 0.01 g/l H3BO3 0.01 g/l MnSO4 x H2O 0.005 g/l Na2SeO3 x 5 H2O 0.0003 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium D-(+)-pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Thiamine HCl 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Riboflavin 5e-05 g/l Nicotinic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Vitamin B12 1e-06 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67769 | positive | growth | 55 |
| 67770 | positive | growth | 55 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 67769 | deep-sea hydrothermal vent | Mid-Okinawa Trough | Japan | JPN | Asia | 27.9128 | 127.106 |
| 67770 | Deep-sea hydrothermal flange structure at the Iheya North hydrothermal field in the Mid-Okinawa Trough | Japan | JPN | Asia |
Sequence information
16S sequences
- @ref: 67770
- description: Nitrosophilus labii HRV44 gene for 16S ribosomal RNA, partial sequence
- accession: LC528620
- length: 1757
- database: nuccore
- NCBI tax ID: 2706014
Genome sequences
- @ref: 67770
- description: Nitrosophilus labii HRV44
- accession: GCA_014466985
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2706014
GC content
| @ref | GC-content | method |
|---|---|---|
| 67769 | 33.4 | sequence analysis |
| 67770 | 33.4 | genome sequence analysis |
External links
@ref: 67769
culture collection no.: DSM 111345, JCM 34002
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 32866828 | Biogeochemical Implications of N2O-Reducing Thermophilic Campylobacteria in Deep-Sea Vent Fields, and the Description of Nitratiruptor labii sp. nov. | Fukushi M, Mino S, Tanaka H, Nakagawa S, Takai K, Sawabe T | iScience | 10.1016/j.isci.2020.101462 | 2020 | ||
| Phylogeny | 33301463 | Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota". | Shiotani T, Mino S, Sato W, Nishikawa S, Yonezawa M, Sievert SM, Sawabe T | PLoS One | 10.1371/journal.pone.0241366 | 2020 | DNA, Bacterial/genetics, Epsilonproteobacteria/*classification/genetics/metabolism, Genome, Bacterial, Hydrogen/metabolism, Hydrothermal Vents/*microbiology, Oxidation-Reduction, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity, Terminology as Topic | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 67769 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111345 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111345) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |