Strain identifier
BacDive ID: 160826
Type strain:
Species: Blastochloris tepida
Strain Designation: GI
Strain history: <- M. Madigan, Southern Illinois University Carbondale; GI <-
NCBI tax ID(s): 2233851 (species)
General
@ref: 67763
BacDive-ID: 160826
DSM-Number: 106918
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Blastochloris tepida GI is a thermophilic bacterium that was isolated from Microbial mat from Soda Dam Hot Springs.
NCBI tax id
- NCBI tax id: 2233851
- Matching level: species
strain history
- @ref: 67763
- history: <- M. Madigan, Southern Illinois University Carbondale; GI <-
doi: 10.13145/bacdive160826.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Blastochloridaceae
- genus: Blastochloris
- species: Blastochloris tepida
- full scientific name: Blastochloris tepida Madigan et al. 2020
@ref: 67763
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Blastochloridaceae
genus: Blastochloris
species: Blastochloris tepida
full scientific name: Blastochloris tepida Madigan et al. 2020
strain designation: GI
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67763
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 67763
- growth: positive
- type: growth
- temperature: 40
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67763
- sample type: Microbial mat from Soda Dam Hot Springs
- geographic location: New Mexico, Soda Dam Hot Springs,
- country: USA
- origin.country: USA
- continent: North America
- latitude: 35.7931
- longitude: 106.685
Sequence information
16S sequences
- @ref: 67763
- description: Blastochloris viridis strain GI 16S ribosomal RNA gene, partial sequence
- accession: AF084510
- length: 1357
- database: ena
- NCBI tax ID: 1079
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Blastochloris tepida GI | GCA_003966715 | complete | ncbi | 2233851 |
66792 | Blastochloris tepida GI | 2887773926 | complete | img | 2233851 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 86.601 | no |
flagellated | yes | 56.052 | no |
gram-positive | no | 98.92 | no |
anaerobic | yes | 96.123 | no |
aerobic | no | 95.221 | no |
halophile | no | 95.355 | no |
spore-forming | no | 93.093 | no |
glucose-util | yes | 56.232 | no |
thermophile | no | 84.609 | yes |
glucose-ferment | no | 84.747 | no |
External links
@ref: 67763
culture collection no.: DSM 106918
straininfo link
- @ref: 113030
- straininfo: 402123
literature
- topic: Phylogeny
- Pubmed-ID: 31317227
- title: Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris.
- authors: Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y
- journal: Arch Microbiol
- DOI: 10.1007/s00203-019-01701-4
- year: 2019
- mesh: Bacteriochlorophylls/metabolism, Classification, DNA, Bacterial/genetics, Hot Springs/*microbiology, Hyphomicrobiaceae/chemistry/*classification/genetics/*physiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Metabolism
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67763 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106918 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106918) | |
113030 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402123.1 |