Strain identifier

BacDive ID: 160826

Type strain: Yes

Species: Blastochloris tepida

Strain Designation: GI

Strain history: <- M. Madigan, Southern Illinois University Carbondale; GI <-

NCBI tax ID(s): 2233851 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67763

BacDive-ID: 160826

DSM-Number: 106918

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Blastochloris tepida GI is a thermophilic bacterium that was isolated from Microbial mat from Soda Dam Hot Springs.

NCBI tax id

  • NCBI tax id: 2233851
  • Matching level: species

strain history

  • @ref: 67763
  • history: <- M. Madigan, Southern Illinois University Carbondale; GI <-

doi: 10.13145/bacdive160826.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Blastochloridaceae
  • genus: Blastochloris
  • species: Blastochloris tepida
  • full scientific name: Blastochloris tepida Madigan et al. 2020

@ref: 67763

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Blastochloridaceae

genus: Blastochloris

species: Blastochloris tepida

full scientific name: Blastochloris tepida Madigan et al. 2020

strain designation: GI

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 67763
  • name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/27
  • composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water

culture temp

  • @ref: 67763
  • growth: positive
  • type: growth
  • temperature: 40
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67763
  • sample type: Microbial mat from Soda Dam Hot Springs
  • geographic location: New Mexico, Soda Dam Hot Springs,
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 35.7931
  • longitude: 106.685

Sequence information

16S sequences

  • @ref: 67763
  • description: Blastochloris viridis strain GI 16S ribosomal RNA gene, partial sequence
  • accession: AF084510
  • length: 1357
  • database: ena
  • NCBI tax ID: 1079

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Blastochloris tepida GIGCA_003966715completencbi2233851
66792Blastochloris tepida GI2887773926completeimg2233851

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.601no
flagellatedyes56.052no
gram-positiveno98.92no
anaerobicyes96.123no
aerobicno95.221no
halophileno95.355no
spore-formingno93.093no
glucose-utilyes56.232no
thermophileno84.609yes
glucose-fermentno84.747no

External links

@ref: 67763

culture collection no.: DSM 106918

straininfo link

  • @ref: 113030
  • straininfo: 402123

literature

  • topic: Phylogeny
  • Pubmed-ID: 31317227
  • title: Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris.
  • authors: Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-019-01701-4
  • year: 2019
  • mesh: Bacteriochlorophylls/metabolism, Classification, DNA, Bacterial/genetics, Hot Springs/*microbiology, Hyphomicrobiaceae/chemistry/*classification/genetics/*physiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67763Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106918Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106918)
113030Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402123.1