Strain identifier
BacDive ID: 160817
Type strain: 
Species: Mesorhizobium norvegicum
Strain Designation: 10.2.2
NCBI tax ID(s): 1085774 (species)
version 8.1 (current version)
General
@ref: 67754
BacDive-ID: 160817
DSM-Number: 108834
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Mesorhizobium norvegicum 10.2.2 is a mesophilic, motile bacterium that was isolated from root nodule of Lotus corniculatus.
NCBI tax id
- NCBI tax id: 1085774
- Matching level: species
doi: 10.13145/bacdive160817.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium norvegicum
- full scientific name: Mesorhizobium norvegicum Kabdullayeva et al. 2020
@ref: 67754
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium norvegicum
full scientific name: Mesorhizobium norvegicum Kabdullayeva et al. 2020
strain designation: 10.2.2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.649 | |
| 69480 | 99.987 | negative |
Culture and growth conditions
culture medium
- @ref: 67754
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 67754
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.992 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67754
- sample type: root nodule of Lotus corniculatus
- geographic location: Fagernes
- country: Norway
- origin.country: NOR
- continent: Europe
- latitude: 61.1818
- longitude: 8.9651
taxonmaps
- @ref: 69479
- File name: preview.99_809.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: MK908404
- Sequence Identity:
- Total samples: 30688
- soil counts: 18576
- aquatic counts: 5652
- animal counts: 4689
- plant counts: 1771
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67754 | Mesorhizobium norvegicum 16S ribosomal RNA gene, partial sequence | MK908404 | 1473 | ena | 1085774 |
| 67754 | Mesorhizobium norvegicum strain 10.2.2, whole genome shotgun sequencing project | SMYZ00000000 | 249 | ena | 1085774 |
Genome sequences
- @ref: 66792
- description: Mesorhizobium norvegicum 10.2.2
- accession: GCA_004919685
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1085774
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 86.2 | no |
| flagellated | no | 82.429 | no |
| gram-positive | no | 97.552 | no |
| anaerobic | no | 99.093 | no |
| aerobic | yes | 94.219 | no |
| halophile | no | 93.84 | no |
| spore-forming | no | 93.867 | no |
| glucose-util | yes | 93.051 | no |
| thermophile | no | 99.373 | yes |
| glucose-ferment | no | 90.833 | no |
External links
@ref: 67754
culture collection no.: DSM 108834, LMG 31153
straininfo link
- @ref: 113025
- straininfo: 402647
literature
- topic: Phylogeny
- Pubmed-ID: 31626582
- title: Mesorhizobium norvegicum sp. nov., a rhizobium isolated from a Lotus corniculatus root nodule in Norway.
- authors: Kabdullayeva T, Crosbie DB, Marin M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003769
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lotus/*microbiology, Mesorhizobium/*classification/isolation & purification, Norway, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67754 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108834 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108834) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 113025 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402647.1 |