Strain identifier

BacDive ID: 16079

Type strain: Yes

Species: Streptomyces violaceorectus

Strain history: KCC S-0532 <-- IFO 13102 <-- SAJ <-- ISP 5279 <-- INA 506.

NCBI tax ID(s): 67379 (species)

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General

@ref: 9430

BacDive-ID: 16079

DSM-Number: 40279

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces violaceorectus DSM 40279 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67379
  • Matching level: species

strain history

@refhistory
9430<- E.B. Shirling, ISP <- G.F. Gauze, INA
67770KCC S-0532 <-- IFO 13102 <-- SAJ <-- ISP 5279 <-- INA 506.

doi: 10.13145/bacdive16079.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces violaceorectus
  • full scientific name: Streptomyces violaceorectus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces violaceorectus

@ref: 9430

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces violaceorectus

full scientific name: Streptomyces violaceorectus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958

type strain: yes

Morphology

multimedia

  • @ref: 9430
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40279.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9430GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9430STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
9430positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
20216Antibiotic agent
20216Antifungal agent

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountry
9430soil
67770SoilCaucasusUSSR

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_2484.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_766;99_2484&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184314
  • Sequence Identity:
  • Total samples: 971
  • soil counts: 718
  • aquatic counts: 54
  • animal counts: 76
  • plant counts: 123

Safety information

risk assessment

  • @ref: 9430
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces violaceorectus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4532D44217120ena67379
20218Streptomyces violaceorectus gene for 16S rRNA, partial sequence, strain: NBRC 13102AB1843141477ena67379

External links

@ref: 9430

culture collection no.: DSM 40279, ATCC 25514, CBS 656.69, IFO 13102, INA 506, ISP 5279, NBRC 13102, RIA 1294, JCM 4532, BCRC 13626, CGMCC 4.1792, IMET 43520, NRRL B-12181, VKM Ac-584

straininfo link

  • @ref: 85148
  • straininfo: 92648

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24091604Streptomyces fukangensis sp. nov., a novel alkaliphilic actinomycete isolated from a saline-alkaline soil.Zhang YG, Wang HF, Liu Q, Hozzein WN, Wadaan MA, Cheng J, Chen YJ, Zhang YM, Li WJAntonie Van Leeuwenhoek10.1007/s10482-013-0045-82013Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny29143728Streptomyces tritici sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).Zhao J, Shi L, Li W, Wang J, Wang H, Tian Y, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0024932017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Triticum/*microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9430Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40279)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40279
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85148Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92648.1StrainInfo: A central database for resolving microbial strain identifiers