General

@ref: 67707

BacDive-ID: 160769

DSM-Number: 29820

keywords: 16S sequence, Bacteria

description: Deinococcus populi PtRA-8 is a bacterium that was isolated from a Japanese aspen tree Populus tremula var. sieboldii.

NCBI tax id

• NCBI tax id: 1573654
• Matching level: species

strain history

• @ref: 67707
• history: <- A. Tonouchi, Faculty Agriculture and Life Sci., Hirosaki Univ., Japan; PtRA-8 <- U. Hiroaki

doi: 10.13145/bacdive160769.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus populi
• full scientific name: Deinococcus populi Li et al. 2018

@ref: 67707

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus populi

full scientific name: Deinococcus populi Li et al. 2018

strain designation: PtRA-8

type strain: no

Culture and growth conditions

culture medium

• @ref: 67707
• name: PLATE COUNT AGAR (DSMZ Medium 464)
• growth: yes
• link: https://mediadive.dsmz.de/medium/464
• composition: Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water

culture temp

• @ref: 67707
• growth: positive
• type: growth
• temperature: 28

Isolation, sampling and environmental information

isolation

• @ref: 67707
• sample type: a Japanese aspen tree Populus tremula var. sieboldii
• geographic location: Aomori Prefecture, Nishimeya Village, Kawaratai
• country: Japan
• origin.country: JPN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_58196.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_25776;97_32332;98_41440;99_58196&stattab=map
• Last taxonomy: Deinococcus populi subclade
• 16S sequence: LC011389
• Sequence Identity:
• Total samples: 122
• soil counts: 36
• aquatic counts: 43
• animal counts: 26
• plant counts: 17

Sequence information

16S sequences

• @ref: 67707
• description: Deinococcus populi gene for 16S ribosomal RNA, partial sequence
• accession: LC011389
• length: 1435
• database: nuccore
• NCBI tax ID: 1573654

External links

@ref: 67707

culture collection no.: DSM 29820, NBRC 110763

literature

• topic: Phylogeny
• Pubmed-ID: 29080938
• title: Description of Deinococcus populi sp. nov. from the trunk surface of a Japanese aspen tree.
• authors: Li J, Kudo C, Tonouchi A
• journal: Arch Microbiol
• DOI: 10.1007/s00203-017-1443-5
• year: 2017
• mesh: Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Deinococcus/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Glycolipids/analysis, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Plant Bark/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
• topic2: Transcriptome

Reference