Strain identifier
BacDive ID: 160729
Type strain: 
Species: Streptomonospora nanhaiensis
Strain Designation: NEAU-Jh2-17
Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-Jh2-17.
NCBI tax ID(s): 1544738 (species)
version 8.1 (current version)
General
@ref: 67642
BacDive-ID: 160729
DSM-Number: 111701
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomonospora nanhaiensis NEAU-Jh2-17 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Muddy soil from a riverbank.
NCBI tax id
- NCBI tax id: 1544738
- Matching level: species
strain history
- @ref: 67770
- history: C. Liu; Northeast Agric. Univ., China; NEAU-Jh2-17.
doi: 10.13145/bacdive160729.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Nocardiopsidaceae
- genus: Streptomonospora
- species: Streptomonospora nanhaiensis
- full scientific name: Streptomonospora nanhaiensis Zhang et al. 2013
synonyms
- @ref: 20215
- synonym: Streptomonospora halotolerans
@ref: 67642
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Nocardiopsaceae
genus: Streptomonospora
species: Streptomonospora halotolerans
full scientific name: Streptomonospora halotolerans Zhao et al. 2015
strain designation: NEAU-Jh2-17
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 67642
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_111701.jpg
- caption: Medium 987 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 67642 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
| 67642 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 67642 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 100 |
| 69481 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-10(H2), MK-10(H8), MK-10(H6), MK-10(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 67642 | Muddy soil from a riverbank | Jilin Province, northern China | China | CHN | Asia |
| 67770 | Muddy soil from a riverbank in Jilin Province | China | CHN | Asia |
taxonmaps
- @ref: 69479
- File name: preview.99_43836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_2754;97_25089;98_31812;99_43836&stattab=map
- Last taxonomy: Streptomonospora
- 16S sequence: KM000838
- Sequence Identity:
- Total samples: 43
- soil counts: 20
- aquatic counts: 2
- animal counts: 16
- plant counts: 5
Safety information
risk assessment
- @ref: 67642
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67642
- description: Streptomonospora halotolerans strain NEAU-Jh2-17 16S ribosomal RNA gene, partial sequence
- accession: KM000838
- length: 1527
- database: ena
- NCBI tax ID: 1544738
Genome sequences
- @ref: 66792
- description: Streptomonospora nanhaiensis NEAU-Jh2-17
- accession: GCA_019733275
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1323731
GC content
- @ref: 67642
- GC-content: 71.82
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 98.548 | no |
| gram-positive | yes | 89.946 | no |
| anaerobic | no | 98.992 | no |
| aerobic | yes | 93.179 | no |
| halophile | no | 61.078 | no |
| spore-forming | yes | 88.465 | no |
| motile | no | 92.382 | no |
| thermophile | no | 94.442 | yes |
| glucose-util | yes | 88.177 | no |
| glucose-ferment | no | 93.514 | no |
External links
@ref: 67642
culture collection no.: DSM 111701, CGMCC 4.7218, JCM 30347
straininfo link
- @ref: 112955
- straininfo: 407039
literature
- topic: Phylogeny
- Pubmed-ID: 26297597
- title: Streptomonospora halotolerans sp. nov., an actinomycete isolated from soil.
- authors: Zhao J, Guo L, Liu C, Sun P, Li J, Li W, Xiang W, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000397
- year: 2015
- mesh: Actinobacteria/genetics, *Actinomycetales/classification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67642 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111701 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111701) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 112955 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407039.1 |