Strain identifier

BacDive ID: 16064

Type strain: Yes

Species: Streptomyces griseoincarnatus

Strain history: KCC S-0422 <-- IFO 12825 <-- SAJ <-- ISP 5179 <-- T. P. Preobrazhenskaya INA 5557/54.

NCBI tax ID(s): 67372 (species)

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General

@ref: 9372

BacDive-ID: 16064

DSM-Number: 40179

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces griseoincarnatus DSM 40179 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil in hot climate.

NCBI tax id

  • NCBI tax id: 67372
  • Matching level: species

strain history

@refhistory
9372<- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA
67770KCC S-0422 <-- IFO 12825 <-- SAJ <-- ISP 5179 <-- T. P. Preobrazhenskaya INA 5557/54.

doi: 10.13145/bacdive16064.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseoincarnatus
  • full scientific name: Streptomyces griseoincarnatus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces variabilis
    20215Streptomyces erythrogriseus
    20215Actinomyces griseoincarnatus
    20215Streptomyces variabilis

@ref: 9372

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces variabilis

full scientific name: Streptomyces variabilis (Preobrazhenskaya et al. 1957) Pridham et al. 1958

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 9372
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9372positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

@refsample type
9372soil in hot climate
67770Soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Climate#Hot

taxonmaps

  • @ref: 69479
  • File name: preview.99_408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ442551
  • Sequence Identity:
  • Total samples: 50
  • soil counts: 30
  • animal counts: 18
  • plant counts: 2

Safety information

risk assessment

  • @ref: 9372
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces variabilis gene for 16S rRNA, partial sequenceAB122723565ena67372
20218Streptomyces variabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4422D44134121ena67372
20218Streptomyces variabilis gene for 16S rRNA, partial sequence, strain: NBRC 12825AB1848841479ena67372
20218Streptomyces variabilis strain NRRL B-3984T 16S ribosomal RNA gene, partial sequenceDQ4425511499ena67372

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces variabilis strain JCM 442267372.4wgspatric67372
67770Streptomyces variabilis JCM 4422GCA_014649935scaffoldncbi67372

GC content

  • @ref: 67770
  • GC-content: 72.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes91.969no
anaerobicno98.998no
halophileno89.592no
spore-formingyes95.346no
glucose-utilyes88.078no
thermophileno98.671no
flagellatedno97.232no
motileno94.568no
aerobicyes94.37no
glucose-fermentno87.216no

External links

@ref: 9372

culture collection no.: DSM 40179, ATCC 19815, ATCC 19930, CBS 568.68, IFO 12825, INA 5557/54, ISP 5179, NBRC 12825, RIA 1095, JCM 4422, BCRC 11488, CGMCC 4.1778, IMET 42059, NRRL B-3984, VKM Ac-1854

literature

  • topic: Phylogeny
  • Pubmed-ID: 28174421
  • title: Streptomyces euryhalinus sp. nov., a new actinomycete isolated from a mangrove forest.
  • authors: Biswas K, Choudhury JD, Mahansaria R, Saha M, Mukherjee J
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2017.3
  • year: 2017
  • mesh: DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Lipids/*chemistry, Phylogeny, RNA, Ribosomal, 16S/*genetics, Random Amplified Polymorphic DNA Technique, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Streptomyces/classification/genetics/*isolation & purification, *Wetlands
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9372Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40179)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40179
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1