Strain identifier

BacDive ID: 160597

Type strain: No

Species: Peptoniphilus vaginalis

Strain Designation: KhD-2

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; KhD-2 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 1756987 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.2 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 9.2 (current version)

General

@ref: 67505

BacDive-ID: 160597

DSM-Number: 101742

keywords: 16S sequence, Bacteria, mesophilic

description: Peptoniphilus vaginalis KhD-2 is a mesophilic bacterium that was isolated from human vagina specimen.

NCBI tax id

  • NCBI tax id: 1756987
  • Matching level: species

strain history

  • @ref: 67505
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; KhD-2 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

doi: 10.13145/bacdive160597.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Peptoniphilus
  • species: Peptoniphilus vaginalis
  • full scientific name: Peptoniphilus vaginalis Diop et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Peptoniphilus vaginalis

@ref: 67505

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Peptoniphilaceae

genus: Peptoniphilus

species: Peptoniphilus vaginalis

full scientific name: Peptoniphilus vaginalis Diop et al. 2016

strain designation: KhD-2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 67505
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 67505
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan+energy source
6838029985L-glutamate-degradation
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838016199urea-hydrolysis
6838017632nitrate-reduction
6838029016arginine-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380alanine arylamidase-3.4.11.2
68380histidine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380tyrosine arylamidase+
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase-
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380tryptophan deaminase+4.1.99.1
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380alpha-galactosidase-3.2.1.22
68380beta-galactosidase-3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380leucyl glycin arylamidase-3.4.11.1
68380alkaline phosphatase-3.1.3.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
67505---------------+-+---+-+-+/-+--

Isolation, sampling and environmental information

isolation

  • @ref: 67505
  • sample type: human vagina specimen
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_2288.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15963;96_304;97_1393;98_1786;99_2288&stattab=map
  • Last taxonomy: Peptoniphilus vaginalis
  • 16S sequence: LN907856
  • Sequence Identity:
  • Total samples: 46986
  • soil counts: 329
  • aquatic counts: 702
  • animal counts: 45749
  • plant counts: 206

Sequence information

16S sequences

  • @ref: 67505
  • description: Peptoniphilus sp. KHD2 partial 16S rRNA gene, strain KHD2
  • accession: LN907856
  • length: 1488
  • database: nuccore
  • NCBI tax ID: 1756987

External links

@ref: 67505

culture collection no.: DSM 101742

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27482387'Peptoniphilus vaginalis' sp. nov., a new species isolated from human female genital tract.Diop K, Mediannikov O, Raoult D, Bretelle F, Fenollar FNew Microbes New Infect10.1016/j.nmni.2016.06.0082016
Phylogeny29931836Description of three new Peptoniphilus species cultured in the vaginal fluid of a woman diagnosed with bacterial vaginosis: Peptoniphilus pacaensis sp. nov., Peptoniphilus raoultii sp. nov., and Peptoniphilus vaginalis sp. nov.Diop K, Diop A, Michelle C, Richez M, Rathored J, Bretelle F, Fournier PE, Fenollar FMicrobiologyopen10.1002/mbo3.6612018Adult, Anaerobiosis, *Bacterial Typing Techniques, Base Composition, Body Fluids/*microbiology, Cytosol/chemistry, Fatty Acids/analysis, Female, Firmicutes/*classification/genetics/*isolation & purification/physiology, Humans, Phylogeny, Sequence Homology, Nucleic Acid, Vaginosis, Bacterial/*microbiologyPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67505Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101742Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101742)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/