Strain identifier

BacDive ID: 16051

Type strain: Yes

Species: Streptomyces thermovulgaris

Strain Designation: R 10

Strain history: KCC S-0338 <-- A. Henssen R10.

NCBI tax ID(s): 1934 (species)

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General

@ref: 9548

BacDive-ID: 16051

DSM-Number: 40444

keywords: genome sequence, 16S sequence, Bacteria

description: Streptomyces thermovulgaris R 10 is a bacterium that was isolated from fresh cow manure.

NCBI tax id

  • NCBI tax id: 1934
  • Matching level: species

strain history

@refhistory
9548<- E.B. Shirling, ISP <- A. Henssen, R-10
67770KCC S-0338 <-- A. Henssen R10.

doi: 10.13145/bacdive16051.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces thermovulgaris
  • full scientific name: Streptomyces thermovulgaris Henssen 1957 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces thermonitrificans

@ref: 9548

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces thermovulgaris

full scientific name: Streptomyces thermovulgaris Henssen 1957

strain designation: R 10

type strain: yes

Morphology

multimedia

  • @ref: 9548
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40444.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9548
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9548positivegrowth37-45
67770positivegrowth50thermophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9548fresh cow manure
67770Fresh cow manureBerlinGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_22203.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_3771;97_13597;98_16747;99_22203&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: Z68094
  • Sequence Identity:
  • Total samples: 9705
  • soil counts: 2719
  • aquatic counts: 1004
  • animal counts: 4416
  • plant counts: 1566

Safety information

risk assessment

  • @ref: 9548
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218S.thermovulgaris 16S rRNA geneZ680941486ena1934
20218Streptomyces thermovulgaris gene for 16S ribosomal RNA, partial sequence, strain: JCM 4520D44208120ena1934
20218Streptomyces thermovulgaris gene for 16S rRNA, partial sequence, strain: NBRC 12383AB1840931481ena1934
20218Streptomyces thermovulgaris gene for 16S rRNA, partial sequence, strain: NBRC 13089AB1843031472ena1934

Genome sequences

  • @ref: 67770
  • description: Streptomyces thermovulgaris NRRL B-12375
  • accession: GCA_002155915
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1934

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.446no
gram-positiveyes90.038no
anaerobicno98.425no
halophileno85.232no
spore-formingyes95.349no
thermophileno68.932yes
glucose-utilyes86.365no
aerobicyes89.222no
glucose-fermentno89.706no
motileno95.62no

External links

@ref: 9548

culture collection no.: DSM 40444, ATCC 19284, CBS 276.66, CBS 643.69, IFO 13089, IFO 16607, ISP 5444, KCC S-0240, KCC S-0520, NBRC 13089, NBRC 16607, RIA 1281, JCM 4338, ATCC 25501, BCRC 12488, BCRC 12638, CGMCC 4.1455, HUT 6605, IFO 16615, JCM 4520, KACC 20092, KCTC 19949, LMG 19342, MTCC 1822, NBRC 16615, NCIMB 10078, NRRL B-12375, VKM Ac-1745

straininfo link

  • @ref: 85124
  • straininfo: 14112

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9548Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40444)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40444
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85124Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14112.1StrainInfo: A central database for resolving microbial strain identifiers