Strain identifier
BacDive ID: 160475
Type strain: 
Species: Paenibacillus sp.
Strain Designation: 23TSA30-6
Strain history: <- J. Lebedeva, Vilnius University, Life Sciences Center, Institute of Bioscience; 23TSA30-6 <- I. Kieraite-Aleksandrova
NCBI tax ID(s): 58172 (species)
version 8.1 (current version)
General
@ref: 67383
BacDive-ID: 160475
DSM-Number: 109041
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus sp. 23TSA30-6 is a spore-forming, mesophilic, motile bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 67383
- history: <- J. Lebedeva, Vilnius University, Life Sciences Center, Institute of Bioscience; 23TSA30-6 <- I. Kieraite-Aleksandrova
doi: 10.13145/bacdive160475.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67383
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: 23TSA30-6
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.907 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 67383
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67383
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 100 |
| 69481 | yes | 99 |
Isolation, sampling and environmental information
isolation
- @ref: 67383
- sample type: soil
- geographic location: Krubera-Voronja Cave
- country: Georgia
- origin.country: GEO
- continent: Asia
Sequence information
16S sequences
- @ref: 67383
- description: Paenibacillus sp. strain 23TSA30-6 16S ribosomal RNA gene, partial sequence
- accession: MK511843
- length: 1521
- database: ena
- NCBI tax ID: 58172
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus sp. 23TSA30-6 | GCA_014858585 | contig | ncbi | 2546104 |
| 66792 | Paenibacillus sp. 23TSA30-6 | 2546104.3 | wgs | patric | 2546104 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| motile | yes | 87.606 | no |
| gram-positive | yes | 88.141 | no |
| anaerobic | no | 96.701 | no |
| aerobic | yes | 80.382 | no |
| halophile | no | 92.988 | no |
| spore-forming | yes | 97.939 | no |
| glucose-util | yes | 93.071 | no |
| flagellated | yes | 71.439 | no |
| thermophile | no | 99.351 | no |
| glucose-ferment | no | 71.181 | no |
External links
@ref: 67383
culture collection no.: DSM 109041
straininfo link
- @ref: 112719
- straininfo: 404665
literature
- Pubmed-ID: 33505378
- title: Genome Mining and Characterization of Biosynthetic Gene Clusters in Two Cave Strains of Paenibacillus sp.
- authors: Lebedeva J, Jukneviciute G, Cepaite R, Vickackaite V, Pranckute R, Kuisiene N
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2020.612483
- year: 2021
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67383 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109041 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109041) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 112719 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404665.1 |