Strain identifier
BacDive ID: 160474
Type strain: 
Species: Paenibacillus bouchesdurhonensis
Strain history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P3071
NCBI tax ID(s): 58172 (species)
version 8.1 (current version)
General
@ref: 67382
BacDive-ID: 160474
DSM-Number: 103972
keywords: genome sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus bouchesdurhonensis DSM 103972 is a spore-forming, mesophilic, motile bacterium that was isolated from stool sample.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 67382
- history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P3071
doi: 10.13145/bacdive160474.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus bouchesdurhonensis
- full scientific name: Paenibacillus bouchesdurhonensis Pham et al. 2017
@ref: 67382
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus bouchesdurhonensis
full scientific name: Paenibacillus bouchesdurhonensis Pham et al. 2017
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.849 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 67382
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67382
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 100 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67382
- sample type: stool sample
- geographic location: Dakar
- country: Senegal
- origin.country: SEN
- continent: Africa
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus bouchesdurhonensis Marseille-P3071T | GCA_900155685 | scaffold | ncbi | 1870990 |
| 66792 | Paenibacillus bouchesdurhonensis Marseille-P3071 | 2791355223 | draft | img | 1870990 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 88.558 | no |
| flagellated | yes | 78.707 | no |
| gram-positive | yes | 79.784 | no |
| anaerobic | no | 98.493 | no |
| aerobic | yes | 76.404 | no |
| halophile | no | 87.311 | no |
| spore-forming | yes | 96.285 | no |
| thermophile | no | 99.371 | yes |
| glucose-util | yes | 84.286 | no |
| glucose-ferment | no | 78.948 | no |
External links
@ref: 67382
culture collection no.: DSM 103972, Marseille-P3071
literature
- topic: Genetics
- Pubmed-ID: 28912952
- title: Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics.
- authors: Pham TP, Tidjani Alou M, Traore SI, Brah S, Ali Diallo B, Diallo A, Sokhna C, Baptiste E, Levasseur A, Fournier PE, Cadoret F, Raoult D
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2017.07.004
- year: 2017
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67382 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103972 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103972) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |