Strain identifier
BacDive ID: 160473
Type strain:
Species: Paenibacillus tuaregi
Strain history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P2472
NCBI tax ID(s): 58172 (species)
General
@ref: 67381
BacDive-ID: 160473
DSM-Number: 102801
keywords: genome sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus tuaregi DSM 102801 is a spore-forming, mesophilic, motile bacterium that was isolated from stool sample, child patient.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 67381
- history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P2472
doi: 10.13145/bacdive160473.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus tuaregi
- full scientific name: Paenibacillus tuaregi Pham et al. 2017
@ref: 67381
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus tuaregi
full scientific name: Paenibacillus tuaregi Pham et al. 2017
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 97.69 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 67381
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67381
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | yes | 100 |
69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67381
- sample type: stool sample, child patient
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus tuaregi Marseille-P2472T | GCA_900086655 | scaffold | ncbi | 1816681 |
66792 | Paenibacillus tuaregi Marseille-P2472 | 2791355224 | draft | img | 1816681 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | yes | 78.106 | no |
gram-positive | yes | 79.466 | no |
anaerobic | no | 97.556 | no |
aerobic | yes | 83.719 | no |
halophile | no | 94.47 | no |
spore-forming | yes | 95.216 | no |
glucose-ferment | no | 80.547 | no |
thermophile | no | 99.569 | yes |
glucose-util | yes | 89.522 | no |
motile | yes | 89.912 | no |
External links
@ref: 67381
culture collection no.: DSM 102801, Marseille-P2472
literature
- topic: Genetics
- Pubmed-ID: 28912952
- title: Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics.
- authors: Pham TP, Tidjani Alou M, Traore SI, Brah S, Ali Diallo B, Diallo A, Sokhna C, Baptiste E, Levasseur A, Fournier PE, Cadoret F, Raoult D
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2017.07.004
- year: 2017
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67381 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102801 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102801) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |