Strain identifier

BacDive ID: 160473

Type strain: No

Species: Paenibacillus tuaregi

Strain history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P2472

NCBI tax ID(s): 58172 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67381

BacDive-ID: 160473

DSM-Number: 102801

keywords: genome sequence, Bacteria, spore-forming, mesophilic, motile

description: Paenibacillus tuaregi DSM 102801 is a spore-forming, mesophilic, motile bacterium that was isolated from stool sample, child patient.

NCBI tax id

  • NCBI tax id: 58172
  • Matching level: species

strain history

  • @ref: 67381
  • history: <- F. Cadoret, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; Marseille-P2472

doi: 10.13145/bacdive160473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus tuaregi
  • full scientific name: Paenibacillus tuaregi Pham et al. 2017

@ref: 67381

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus tuaregi

full scientific name: Paenibacillus tuaregi Pham et al. 2017

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.69
69480100positive

Culture and growth conditions

culture medium

  • @ref: 67381
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 67381
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes100
69481yes100

Isolation, sampling and environmental information

isolation

  • @ref: 67381
  • sample type: stool sample, child patient
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus tuaregi Marseille-P2472TGCA_900086655scaffoldncbi1816681
66792Paenibacillus tuaregi Marseille-P24722791355224draftimg1816681

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedyes78.106no
gram-positiveyes79.466no
anaerobicno97.556no
aerobicyes83.719no
halophileno94.47no
spore-formingyes95.216no
glucose-fermentno80.547no
thermophileno99.569yes
glucose-utilyes89.522no
motileyes89.912no

External links

@ref: 67381

culture collection no.: DSM 102801, Marseille-P2472

literature

  • topic: Genetics
  • Pubmed-ID: 28912952
  • title: Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics.
  • authors: Pham TP, Tidjani Alou M, Traore SI, Brah S, Ali Diallo B, Diallo A, Sokhna C, Baptiste E, Levasseur A, Fournier PE, Cadoret F, Raoult D
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2017.07.004
  • year: 2017

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67381Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102801Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102801)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1