Strain identifier

BacDive ID: 160466

Type strain: No

Species: Paenibacillus sp.

Strain Designation: GM2

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France <- URMITE, Univ. Méditerranée, Marseille, France

NCBI tax ID(s): 58172 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67374

BacDive-ID: 160466

DSM-Number: 100384

keywords: genome sequence, Bacteria, mesophilic

description: Paenibacillus sp. GM2 is a mesophilic bacterium that was isolated from human stool specimen.

NCBI tax id

  • NCBI tax id: 58172
  • Matching level: species

strain history

  • @ref: 67374
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France <- URMITE, Univ. Méditerranée, Marseille, France

doi: 10.13145/bacdive160466.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus sp.
  • full scientific name: Paenibacillus Ash et al. 1994
  • synonyms

    • @ref: 20215
    • synonym: Aerobacillus

@ref: 67374

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus sp.

full scientific name: Paenibacillus sp.

strain designation: GM2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 67374
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 67374
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67374
  • sample type: human stool specimen
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus sp. GM2GCA_900069005scaffoldncbi1622070
66792Paenibacillus sp. GM21622070.3wgspatric1622070
66792Paenibacillus sp. GM22713896954draftimg1622070

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91no
motileyes91no
flagellatedyes79.154no
flagellatedyes79.154no
gram-positiveyes82.104no
gram-positiveyes82.104no
anaerobicno97.59no
anaerobicno97.59no
aerobicyes64.545no
aerobicyes64.545no
halophileno92.28no
halophileno92.28no
spore-formingyes96.463no
spore-formingyes96.463no
glucose-fermentno72.129no
glucose-fermentno72.129no
thermophileno99.385yes
thermophileno99.385yes
glucose-utilyes86.937no
glucose-utilyes86.937no

External links

@ref: 67374

culture collection no.: DSM 100384

straininfo link

  • @ref: 112713
  • straininfo: 407372

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67374Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100384Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100384)
112713Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407372.1