Strain identifier
BacDive ID: 160466
Type strain:
Species: Paenibacillus sp.
Strain Designation: GM2
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France <- URMITE, Univ. Méditerranée, Marseille, France
NCBI tax ID(s): 58172 (species)
General
@ref: 67374
BacDive-ID: 160466
DSM-Number: 100384
keywords: genome sequence, Bacteria, mesophilic
description: Paenibacillus sp. GM2 is a mesophilic bacterium that was isolated from human stool specimen.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 67374
- history: <- S. Khelaifia, Timone Hospital, Marseille, France <- URMITE, Univ. Méditerranée, Marseille, France
doi: 10.13145/bacdive160466.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67374
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: GM2
type strain: no
Culture and growth conditions
culture medium
- @ref: 67374
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67374
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67374
- sample type: human stool specimen
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus sp. GM2 | GCA_900069005 | scaffold | ncbi | 1622070 |
66792 | Paenibacillus sp. GM2 | 1622070.3 | wgs | patric | 1622070 |
66792 | Paenibacillus sp. GM2 | 2713896954 | draft | img | 1622070 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 91 | no |
motile | yes | 91 | no |
flagellated | yes | 79.154 | no |
flagellated | yes | 79.154 | no |
gram-positive | yes | 82.104 | no |
gram-positive | yes | 82.104 | no |
anaerobic | no | 97.59 | no |
anaerobic | no | 97.59 | no |
aerobic | yes | 64.545 | no |
aerobic | yes | 64.545 | no |
halophile | no | 92.28 | no |
halophile | no | 92.28 | no |
spore-forming | yes | 96.463 | no |
spore-forming | yes | 96.463 | no |
glucose-ferment | no | 72.129 | no |
glucose-ferment | no | 72.129 | no |
thermophile | no | 99.385 | yes |
thermophile | no | 99.385 | yes |
glucose-util | yes | 86.937 | no |
glucose-util | yes | 86.937 | no |
External links
@ref: 67374
culture collection no.: DSM 100384
straininfo link
- @ref: 112713
- straininfo: 407372
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67374 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100384 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100384) | |
112713 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407372.1 |