Strain identifier
BacDive ID: 16041
Type strain: 
Species: Streptomyces thermodiastaticus
Strain history: KCC S-0840 <-- IFO 13468 <-- SAJ <-- ISP 5573 <-- CUB 387 <-- J. R. Denison.
NCBI tax ID(s): 44061 (species)
version 8.1 (current version)
General
@ref: 9654
BacDive-ID: 16041
DSM-Number: 40573
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic
description: Streptomyces thermodiastaticus DSM 40573 is a spore-forming, thermophilic bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 44061
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9654 | <- JCM, JCM 4840 <- KCC S-0840 <- IFO 13468 <- SAJ <- ISP 5573 <- CUB 387 <- J. R. Denison. |
| 67770 | KCC S-0840 <-- IFO 13468 <-- SAJ <-- ISP 5573 <-- CUB 387 <-- J. R. Denison. |
doi: 10.13145/bacdive16041.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces thermodiastaticus
- full scientific name: Streptomyces thermodiastaticus (Bergey et al. 1923) Waksman 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces thermodiastaticus
@ref: 9654
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces thermodiastaticus
full scientific name: Streptomyces thermodiastaticus (Bergey et al. 1923) Waksman 1953
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.698 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 45
- range: thermophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Safety information
risk assessment
- @ref: 9654
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | S.thermodiastaticus 16S rRNA gene | Z68101 | 1483 | ena | 44061 |
| 20218 | Streptomyces thermodiastaticus gene for 16S rRNA, partial sequence, strain: JCM 4840, clone 121 | AB018095 | 1529 | ena | 44061 |
| 20218 | Streptomyces thermodiastaticus gene for 16S rRNA, partial sequence, strain: JCM 4840, clone 123 | AB018096 | 1529 | ena | 44061 |
| 20218 | Streptomyces thermodiastaticus gene for 16S rRNA, partial sequence, strain: NBRC 100020 | AB249928 | 1482 | ena | 44061 |
| 20218 | Streptomyces thermodiastaticus gene for 16S rRNA, partial sequence, strain: NBRC 13468 | AB184426 | 1480 | ena | 44061 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces thermodiastaticus JCM 4840 | GCA_014656135 | scaffold | ncbi | 44061 |
| 66792 | Streptomyces thermodiastaticus strain JCM 4840 | 44061.4 | wgs | patric | 44061 |
| 66792 | Streptomyces thermodiastaticus DSM 40573 | 2928337282 | draft | img | 44061 |
| 66792 | Streptomyces thermodiastaticus DSM 40573 | GCA_021394575 | contig | ncbi | 44061 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 98.468 | no |
| gram-positive | yes | 91.98 | no |
| anaerobic | no | 98.848 | no |
| aerobic | yes | 91.896 | no |
| halophile | no | 92.396 | no |
| spore-forming | yes | 96.356 | no |
| glucose-util | yes | 88.253 | no |
| thermophile | yes | 53.079 | yes |
| motile | no | 93.971 | no |
| glucose-ferment | no | 89.993 | no |
External links
@ref: 9654
culture collection no.: DSM 40573, ATCC 27472, CBS 769.72, CUB 387, IFO 13468, IFO 16608, ISP 5573, NBRC 100020, NBRC 13468, NBRC 16608, RIA 1429, JCM 4840, BCRC 12492, BCRC 12636, CGMCC 4.1759, HUT 6606, IFO 16689, NBRC 16689, NRRL B-5316
straininfo link
- @ref: 85114
- straininfo: 389349
literature
- topic: Phylogeny
- Pubmed-ID: 9542077
- title: Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil.
- authors: Kim SB, Falconer C, Williams E, Goodfellow M
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-48-1-59
- year: 1998
- mesh: DNA, Bacterial/analysis, Hot Temperature, Microscopy, Electron, Scanning, Phenotype, Phylogeny, Random Amplified Polymorphic DNA Technique, *Soil Microbiology, Streptomyces/*classification/genetics/ultrastructure
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9654 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40573) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40573 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85114 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389349.1 | StrainInfo: A central database for resolving microbial strain identifiers |