Strain identifier

BacDive ID: 16037

Type strain: Yes

Species: Streptomyces tendae

Strain history: KCC S-0149 <-- Y. Okami (NIHJ 179) <-- ETH 11313.

NCBI tax ID(s): 1932 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9313

BacDive-ID: 16037

DSM-Number: 40101

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces tendae DSM 40101 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 1932
  • Matching level: species

strain history

@refhistory
9313<- E.B. Shirling, ISP <- R. Hütter, ETH, 11313
67770KCC S-0149 <-- Y. Okami (NIHJ 179) <-- ETH 11313.

doi: 10.13145/bacdive16037.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tendae
  • full scientific name: Streptomyces tendae Ettlinger et al. 1958 (Approved Lists 1980)

@ref: 9313

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tendae

full scientific name: Streptomyces tendae Ettlinger et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.151
69480100positive

multimedia

  • @ref: 9313
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40101.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9313
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9313positivegrowth37mesophilic
18533positiveoptimum30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9313magnamycin
9313aminoacylase
9313restriction endonuclease SteI
20216Carbomycin (Magnamycin)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853317234glucose+
1853322599arabinose+
1853317992sucrose-
1853318222xylose-
1853317268myo-inositol+
1853329864mannitol+
1853328757fructose+
1853326546rhamnose-
1853316634raffinose-
1853362968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770carbomycinyes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideyes16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18533----+++--++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9313soilFranceFRAEurope
67770SoilFranceFRAEuropeTende

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_357.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_357&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184172
  • Sequence Identity:
  • Total samples: 5402
  • soil counts: 2201
  • aquatic counts: 991
  • animal counts: 1970
  • plant counts: 240

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93131Risk group (German classification)
185331German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces tendae strain DSM40101 16S-23S intergenic spacer region, partial sequenceAF363490277ena1932
20218Streptomyces tendae 16S ribosomal RNA, complete sequenceD638731530ena1932
20218Streptomyces tendae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4149D44016121ena1932
20218Streptomyces tendae gene for 16S rRNA, partial sequence, strain: NBRC 12822AB1841721470ena1932

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces tendae strain JCM 46101932.11wgspatric1932
67770Streptomyces tendae JCM 4610GCA_014650435scaffoldncbi1932

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.727no
gram-positiveyes88.439no
anaerobicno99.065no
aerobicyes93.52no
halophileno88.21no
spore-formingyes94.632no
glucose-utilyes89.983no
flagellatedno98.018no
thermophileno98.814no
glucose-fermentno89.03no

External links

@ref: 9313

culture collection no.: DSM 40101, ATCC 19812, CBS 565.68, IFO 12822, ISP 5101, JCM 4149, NBRC 12822, RIA 1092, RIA 534, ETH 11313, BCRC 12167, CBS 431.59, CGMCC 4.1460, ICMP 132, IFM 1176, IMET 40459, JCM 4610, KCTC 19061, LMG 19314, LMG 5987, NCIMB 9614, NRRL B-2313, VKM Ac-1889

straininfo link

  • @ref: 85110
  • straininfo: 5019

literature

  • topic: Phylogeny
  • Pubmed-ID: 15803384
  • title: Streptomyces nanningensis sp. nov. a novel Streptomycete from forest soil.
  • authors: Jiang Y, Li WJ, Xu P, Li MG, Wen ML, Du GH, Xu LH, Jiang CL
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-004-3210-2
  • year: 2005
  • mesh: Bacterial Typing Techniques, Base Sequence, Cell Wall/chemistry, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiology, *Trees
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9313Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40101)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40101
18533Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40101.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85110Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5019.1StrainInfo: A central database for resolving microbial strain identifiers