Strain identifier
BacDive ID: 160343
Type strain: 
Species: Limosilactobacillus reuteri subsp. kinnaridis
Strain Designation: AP3
Strain history: <- F. Li, University of Alberta; AP3
NCBI tax ID(s): 2759856 (subspecies)
version 9.3 (current version)
General
@ref: 67249
BacDive-ID: 160343
DSM-Number: 110703
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Limosilactobacillus reuteri subsp. kinnaridis AP3 is a mesophilic, Gram-positive bacterium that was isolated from gastrointestinal tract of Argus Pheasant.
NCBI tax id
- NCBI tax id: 2759856
- Matching level: subspecies
strain history
- @ref: 67249
- history: <- F. Li, University of Alberta; AP3
doi: 10.13145/bacdive160343.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Limosilactobacillus
- species: Limosilactobacillus reuteri subsp. kinnaridis
- full scientific name: Limosilactobacillus reuteri subsp. kinnaridis Li et al. 2021
@ref: 67249
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Limosilactobacillus
species: Limosilactobacillus reuteri subsp. kinnaridis
full scientific name: Limosilactobacillus reuteri subsp. kinnaridis Li et al. 2021
strain designation: AP3
type strain: yes
Morphology
cell morphology
- @ref: 125438
- gram stain: positive
- confidence: 92.097
Culture and growth conditions
culture medium
- @ref: 67249
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 67249
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 94.5
Isolation, sampling and environmental information
isolation
- @ref: 67249
- sample type: gastrointestinal tract of Argus Pheasant
- geographic location: Lincoln, Nebraska
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Limosilactobacillus reuteri AP3 | GCA_014145445 | scaffold | ncbi | 1598 |
| 66792 | Limosilactobacillus reuteri AP3 | GCA_020786015 | scaffold | ncbi | 1598 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.097 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 81.817 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.264 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.36 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 57.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 51.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 77.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94.5 |
External links
@ref: 67249
culture collection no.: DSM 110703, LMG 31724
straininfo link
- @ref: 112596
- straininfo: 402199
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67249 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110703 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110703) | |
| 112596 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402199.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |