Strain identifier
BacDive ID: 160325
Type strain: 
Species: Acerihabitans arboris
Strain Designation: SAP-6
Strain history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee
General
@ref: 67228
BacDive-ID: 160325
DSM-Number: 104038
keywords: Bacteria, 16S sequence, mesophilic
description: Acerihabitans arboris SAP-6 is a mesophilic Proteobacterium that was isolated from Sap of plant.
strain history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee
doi: 10.13145/bacdive160325.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Pectobacteriaceae
- genus: Acerihabitans
- species: Acerihabitans arboris
- full scientific name: Acerihabitans arboris Lee et al. 2021
@ref: 67228
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Pectobacteriaceae
genus: Acerihabitans
species: Acerihabitans sp.
full scientific name: Acerihabitans sp.
strain designation: SAP-6
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 67228 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://bacmedia.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 67228 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://bacmedia.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 67228
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | + | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | - | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67228 | + | - | + | - | - | + | - | + | + | + | + | + | + | - | + | - | - | + | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 67228
- sample type: Sap of plant
- geographic location: Jeju
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67228
- description: Yersiniaceae bacterium strain SAP-6 16S ribosomal RNA gene, partial sequence
- accession: MN737198
- length: 1467
- database: ena
- NCBI tax ID: 2691583
Genome sequences
- @ref: 66792
- description: Acerihabitans arboris SAP-6
- accession: GCA_010131535
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2691583
External links
@ref: 67228
culture collection no.: DSM 104038, KCTC 52622
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |
| 67228 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104038 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104038) |