Strain identifier

BacDive ID: 160325

Type strain: Yes

Species: Acerihabitans arboris

Strain Designation: SAP-6

Strain history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 6 (current version):
version 6 (current version)

General

@ref: 67228

BacDive-ID: 160325

DSM-Number: 104038

keywords: Bacteria, 16S sequence, mesophilic

description: Acerihabitans arboris SAP-6 is a mesophilic Proteobacterium that was isolated from Sap of plant.

strain history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee

doi: 10.13145/bacdive160325.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Pectobacteriaceae
  • genus: Acerihabitans
  • species: Acerihabitans arboris
  • full scientific name: Acerihabitans arboris Lee et al. 2021

@ref: 67228

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Pectobacteriaceae

genus: Acerihabitans

species: Acerihabitans sp.

full scientific name: Acerihabitans sp.

strain designation: SAP-6

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67228NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
67228TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://bacmedia.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 67228
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
67228+-+--+-++++++-+--++--

Isolation, sampling and environmental information

isolation

  • @ref: 67228
  • sample type: Sap of plant
  • geographic location: Jeju
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67228
  • description: Yersiniaceae bacterium strain SAP-6 16S ribosomal RNA gene, partial sequence
  • accession: MN737198
  • length: 1467
  • database: ena
  • NCBI tax ID: 2691583

Genome sequences

  • @ref: 66792
  • description: Acerihabitans arboris SAP-6
  • accession: GCA_010131535
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2691583

External links

@ref: 67228

culture collection no.: DSM 104038, KCTC 52622

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
67228Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104038Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104038)