Strain identifier

BacDive ID: 160325

Type strain: Yes

Species: Acerihabitans arboris

Strain Designation: SAP-6

Strain history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67228

BacDive-ID: 160325

DSM-Number: 104038

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Acerihabitans arboris SAP-6 is a mesophilic, motile bacterium that was isolated from Sap of plant.

strain history

  • @ref: 67228
  • history: <- S. Lee, Jeju National University, Republic of Korea; SAP-6 <-Soon Dong Lee

doi: 10.13145/bacdive160325.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Pectobacteriaceae
  • genus: Acerihabitans
  • species: Acerihabitans arboris
  • full scientific name: Acerihabitans arboris Lee et al. 2021

@ref: 67228

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Pectobacteriaceae

genus: Acerihabitans

species: Acerihabitans sp.

full scientific name: Acerihabitans sp.

strain designation: SAP-6

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes99.221
6948099.876negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67228NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Soil extract 500.0 g/l NaCl 50.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
67228TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 67228
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no98.843
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
67228+-+--+-++++++-+--++--

Isolation, sampling and environmental information

isolation

  • @ref: 67228
  • sample type: Sap of plant
  • geographic location: Jeju
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67228
  • description: Yersiniaceae bacterium strain SAP-6 16S ribosomal RNA gene, partial sequence
  • accession: MN737198
  • length: 1467
  • database: ena
  • NCBI tax ID: 2691583

Genome sequences

  • @ref: 66792
  • description: Acerihabitans arboris SAP-6
  • accession: GCA_010131535
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2691583

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.897no
flagellatedno62.422no
gram-positiveno97.754no
anaerobicno95.572no
aerobicno62.789no
halophileno92.484no
spore-formingno94.121no
glucose-utilyes93.662no
thermophileno99.58yes
glucose-fermentyes87.86no

External links

@ref: 67228

culture collection no.: DSM 104038, KCTC 52622

straininfo link

  • @ref: 112580
  • straininfo: 398374

literature

  • topic: Phylogeny
  • Pubmed-ID: 33528350
  • title: Acerihabitans arboris gen. nov., sp. nov., a new member of the family Pectobacteriaceae isolated from sap drawn from Acer pictum.
  • authors: Lee SD, Kim IS, Choe H, Kim JS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004674
  • year: 2021

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67228Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104038Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104038)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112580Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398374.1