Strain identifier
BacDive ID: 16030
Type strain: 
Species: Streptomyces subrutilus
Strain history: KCC S-0695 <-- IFM 1222 (T. Arai 713).
NCBI tax ID(s): 36818 (species)
version 8.1 (current version)
General
@ref: 9549
BacDive-ID: 16030
DSM-Number: 40445
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, antibiotic compound production
description: Streptomyces subrutilus DSM 40445 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from Soil.
NCBI tax id
- NCBI tax id: 36818
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9549 | <- E.B. Shirling, ISP <- T. Arai, Chiba Univ., IFM 713 |
| 67770 | KCC S-0695 <-- IFM 1222 (T. Arai 713). |
doi: 10.13145/bacdive16030.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces subrutilus
- full scientific name: Streptomyces subrutilus Arai et al. 1964 (Approved Lists 1980)
@ref: 9549
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces subrutilus
full scientific name: Streptomyces subrutilus Arai et al. 1964
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9549 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9549 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9549 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
compound production
- @ref: 9549
- compound: hydroxystreptomycin
metabolite production
- @ref: 67770
- Chebi-ID: 24750
- metabolite: hydroxystreptomycin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Aomori Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_163.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_144;99_163&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: X80825
- Sequence Identity:
- Total samples: 26399
- soil counts: 19336
- aquatic counts: 1680
- animal counts: 1702
- plant counts: 3681
Safety information
risk assessment
- @ref: 9549
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces subrutilus 16S ribosomal RNA gene, partial sequence | U72172 | 269 | ena | 36818 |
| 20218 | Streptomyces subrutilus 16S rRNA gene, strain DSM 40445 | X80825 | 1516 | ena | 36818 |
| 20218 | Streptomyces subrutilus gene for 16S rRNA, partial sequence, strain: NBRC 13388 | AB184372 | 1474 | ena | 36818 |
| 20218 | Streptomyces subrutilus strain NRRL B-12377T 16S ribosomal RNA gene, partial sequence | DQ442545 | 1471 | ena | 36818 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces subrutilus ATCC 27467 | GCA_008704535 | complete | ncbi | 36818 |
| 66792 | Streptomyces subrutilus JCM 4834 | GCA_014650935 | scaffold | ncbi | 36818 |
| 66792 | Streptomyces subrutilus strain ATCC 27467 | 36818.16 | complete | patric | 36818 |
| 66792 | Streptomyces subrutilus strain JCM 4834 | 36818.17 | wgs | patric | 36818 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 92.906 | no |
| flagellated | no | 97.208 | no |
| gram-positive | yes | 89.023 | no |
| anaerobic | no | 98.633 | no |
| aerobic | yes | 89.229 | no |
| halophile | no | 94.676 | no |
| spore-forming | yes | 92.491 | no |
| thermophile | no | 99.291 | no |
| glucose-util | yes | 90.854 | no |
| glucose-ferment | no | 89.148 | no |
External links
@ref: 9549
culture collection no.: DSM 40445, ATCC 27467, CBS 689.72, IFO 13388, ISP 5445, JCM 4695, JCM 4834, NBRC 13388, RIA 1349, IFM 713, BCRC 11921, CGMCC 4.1784, IFM 1222, KCTC 9045, MTCC 4731, NRRL B-12377, VKM Ac-1210
straininfo link
- @ref: 85103
- straininfo: 92614
literature
- Pubmed-ID: 16233097
- title: Microbial synthesis of three metabolites of a tachykinin receptor antagonist, TAK-637.
- authors: Tarui N, Ikeura Y, Natsugari H, Nakahama K
- journal: J Biosci Bioeng
- DOI: 10.1263/jbb.92.285
- year: 2001
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9549 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40445) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40445 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85103 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92614.1 | StrainInfo: A central database for resolving microbial strain identifiers |