Strain identifier

BacDive ID: 1603

Type strain: Yes

Species: Bacteroides xylanolyticus

Culture col. no.: DSM 3808, X5-1 , CCUG 48289

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1474

BacDive-ID: 1603

DSM-Number: 3808

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic

description: Bacteroides xylanolyticus DSM 3808 is an anaerobe, mesophilic bacterium that was isolated from methane producing cattle manure.

strain history: <- A.J.B. Zehnder, X5-1

doi: 10.13145/bacdive1603.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Hungatella
  • species: Hungatella xylanolytica
  • full scientific name: Hungatella xylanolytica (Scholten-Koerselman et al. 1988) García-López et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacteroides xylanolyticus

@ref: 1474

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Bacteroidaceae

genus: Bacteroides

species: Bacteroides xylanolyticus

full scientific name: Bacteroides xylanolyticus Scholten-Koerselman et al. 1988

type strain: yes

Morphology

colony morphology

  • @ref: 1474
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlink
1474COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), anaerobic; produces gasyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
1474PYG MEDIUM WITH VOLATILE FATTY ACIDS (DSMZ Medium 328), anaerobic; produces gasyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium328.pdf

culture temp

@refgrowthtypetemperaturerange
1474positivegrowth37mesophilic
58067positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1474anaerobe
58067anaerobe

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
1474-----------+--------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
1474-+/-++-+++--++-----------------
1474-+++-+++--++-----------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1474methane producing cattle manureNetherlandsNLDEurope
58067Methane producing cattle manure

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 1474
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1474
  • description: Bacteroides xylanolyticus 16S ribosomal RNA gene, partial sequence
  • accession: DQ497992
  • length: 1378
  • database: ena
  • NCBI tax ID: 384636

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacteroides xylanolyticus DSM 3808GCA_002934545contigncbi384636
66792Bacteroides xylanolyticus B5AGCA_013036995contigncbi384636
66792Bacteroides xylanolyticus strain DSM 3808384636.4wgspatric384636
66792Bacteroides xylanolyticus DSM 38082739367553permanentimg384636

GC content

  • @ref: 1474
  • GC-content: 34.8

External links

@ref: 1474

culture collection no.: DSM 3808, X5-1, CCUG 48289

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/158543

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1474Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3808)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3808
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
58067Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48289)https://www.ccug.se/strain?id=48289
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)