Strain identifier

BacDive ID: 160198

Type strain: Yes

Species: Streptococcus hillyeri

Strain Designation: 28462

Strain history: <- G. Paterson, Royal (Dick) School of Veterinary Studies; 28462 <- A. Waller, Animal Health Trust; 28462

NCBI tax ID(s): 1306 (species)

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General

@ref: 67102

BacDive-ID: 160198

DSM-Number: 107951

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, coccus-shaped

description: Streptococcus hillyeri 28462 is a mesophilic, Gram-positive, coccus-shaped bacterium that was isolated from tracheal sample from thoroughbred colt racehorse.

NCBI tax id

  • NCBI tax id: 1306
  • Matching level: species

strain history

  • @ref: 67102
  • history: <- G. Paterson, Royal (Dick) School of Veterinary Studies; 28462 <- A. Waller, Animal Health Trust; 28462

doi: 10.13145/bacdive160198.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus hillyeri
  • full scientific name: Streptococcus hillyeri MacFadyen et al. 2019

@ref: 67102

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus hillyeri

full scientific name: Streptococcus hillyeri MacFadyen et al. 2019

strain designation: 28462

type strain: yes

Morphology

cell morphology

  • @ref: 67980
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

  • @ref: 67980
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • colony size: 1 mm
  • colony color: non pigmented
  • medium used: Columbia blood agar with 5% horse blood

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67102COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
67102TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 67102
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 67980
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

observation

  • @ref: 67980
  • observation: insoluble in bile (deoxycholate)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6798017716lactose+builds acid from
6798017814salicin+builds acid from
6798017992sucrose+builds acid from
6798017306maltose+builds acid from
6798027082trehalose+builds acid from
6798016899D-mannitol+builds acid from
6798027941pullulan+builds acid from
6798016024D-mannose+builds acid from
6798065327D-xylose-builds acid from
6798023456cyclodextrin-builds acid from
6798017924D-sorbitol-builds acid from
6798016988D-ribose-builds acid from
6798016634raffinose-builds acid from
67980320055methyl beta-D-glucopyranoside-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
6798086455optochinyesyes
679808309polymyxin byesyes
6798028669bacitracinyesyes

enzymes

@refvalueactivityec
67980catalase-1.11.1.6
67980phenylalanine arylamidase+
67980proline-arylamidase+3.4.11.5
67980leucine arylamidase+3.4.11.1
67980tyrosine arylamidase-
67980phosphatase+
67980alpha-glucosidase-3.2.1.20
67980arginine dihydrolase-3.5.3.6
67980alpha-galactosidase-3.2.1.22
67980beta-galactopyranosidase-
67980beta-glucuronidase-3.2.1.31
67980urease-3.5.1.5
67980L-aspartate arylamidase-3.4.11.21
67980phosphatidylinositol phospholipase C-3.1.4.11
67980N-acetyl-beta-glucosaminidase-3.2.1.52
67980alpha-mannosidase-3.2.1.24
67980pyrrolidonyl arylamidase-3.4.19.3
67980lactosidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
67102tracheal sample from thoroughbred colt racehorseEngland, East AngliaUnited KingdomGBREurope
67980a routine tracheal sample from a 3 year old thoroughbred coltEast AngliaEnglandGBREurope2010

taxonmaps

  • @ref: 69479
  • File name: preview.99_156432.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_57566;97_76428;98_103123;99_156432&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: MH643904
  • Sequence Identity:
  • Total samples: 1137
  • soil counts: 13
  • aquatic counts: 5
  • animal counts: 1111
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 67980
  • description: Streptococcus sp. 28462 16S ribosomal RNA gene, partial sequence
  • accession: MH643904
  • length: 1501
  • database: ena
  • NCBI tax ID: 2282420

Genome sequences

  • @ref: 67980
  • description: Streptococcus hillyeri 28462
  • accession: GCA_003686955
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2282420

GC content

  • @ref: 67980
  • GC-content: 39.5
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.721no
flagellatedno97.163no
gram-positiveyes92.466yes
anaerobicno94.018no
aerobicno97.027no
halophileyes75.739no
spore-formingno94.73no
glucose-utilyes86.297no
thermophileno99.427yes
glucose-fermentyes83.25no

External links

@ref: 67102

culture collection no.: DSM 107951, CCUG 72762, NCTC 14183, DSM 107591

straininfo link

  • @ref: 112463
  • straininfo: 399321

literature

  • topic: Phylogeny
  • Pubmed-ID: 31287393
  • title: Streptococcus hillyeri sp. nov., isolated from equine trachea.
  • authors: MacFadyen AC, Waller AS, Paterson GK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003489
  • year: 2019
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, England, Fatty Acids/chemistry, Genes, Bacterial, Horses/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/isolation & purification, Trachea/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67102Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107951Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107951)
67980A. C. MacFadyen, A. S. Waller2, G. K. PatersonStreptococcus hillyeri sp. nov., isolated from equine trachea10.1099/ijsem.0.003489IJSEM 69: 3009-3013 2019
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112463Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399321.1