Strain identifier
BacDive ID: 160150
Type strain:
Species: Pseudomonas aeruginosa
Strain Designation: 10659725 BWKH 1
Strain history: <- M. Müller, BWKH Berlin;
NCBI tax ID(s): 287 (species)
General
@ref: 67054
BacDive-ID: 160150
DSM-Number: 112473
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas aeruginosa 10659725 BWKH 1 is a mesophilic human pathogen that was isolated from aspirat wound.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 67054
- history: <- M. Müller, BWKH Berlin;
doi: 10.13145/bacdive160150.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 67054
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
strain designation: 10659725 BWKH 1
type strain: no
Culture and growth conditions
culture medium
- @ref: 67054
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 67054
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | + | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
67054 | + | - | - | + | + | +/- | + | - | + | - | - | + | + | - | + | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 67054
- sample type: aspirat wound
- geographic location: Berlin
- country: Germany
- origin.country: DEU
- continent: Europe
Safety information
risk assessment
- @ref: 67054
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Pseudomonas aeruginosa 10% 1
- accession: GCA_001373735
- assembly level: contig
- database: ncbi
- NCBI tax ID: 287
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 85.508 | no |
gram-positive | no | 98.509 | no |
anaerobic | no | 98.631 | no |
aerobic | yes | 93.089 | no |
halophile | no | 91.557 | no |
spore-forming | no | 93.127 | no |
glucose-util | yes | 89.618 | yes |
thermophile | no | 99.808 | no |
motile | yes | 89.827 | no |
glucose-ferment | no | 90.376 | yes |
External links
@ref: 67054
culture collection no.: DSM 112473
straininfo link
- @ref: 112425
- straininfo: 406580
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67054 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112473 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112473) | |
68369 | Automatically annotated from API 20NE | |||
112425 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406580.1 |