Strain identifier

BacDive ID: 160075

Type strain: No

Species: Lactobacillus crispatus

Strain Designation: Cla-CZ-47

Strain history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-47

NCBI tax ID(s): 47770 (species)

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General

@ref: 66979

BacDive-ID: 160075

DSM-Number: 108970

keywords: genome sequence, 16S sequence, Bacteria

description: Lactobacillus crispatus Cla-CZ-47 is a bacterium that was isolated from chicken colon content, adult.

NCBI tax id

  • NCBI tax id: 47770
  • Matching level: species

strain history

  • @ref: 66979
  • history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-47

doi: 10.13145/bacdive160075.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus crispatus
  • full scientific name: Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Eubacterium crispatum

@ref: 66979

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus crispatus

full scientific name: Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 emend. Cato et al. 1983

strain designation: Cla-CZ-47

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive92.409
6948093no

Culture and growth conditions

culture medium

  • @ref: 66979
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 66979
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 91.345

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66979--++--+---++-----++-++++++++/-+

Isolation, sampling and environmental information

isolation

  • @ref: 66979
  • sample type: chicken colon content, adult
  • geographic location: Geretsried (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 47.8589
  • longitude: 11.5894

Safety information

risk assessment

  • @ref: 66979
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66979
  • description: Lactobacillus crispatus strain ClaCZ47 16S ribosomal RNA gene, partial sequence
  • accession: MN055937.1
  • length: 1502
  • database: nuccore
  • NCBI tax ID: 47770

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus crispatus strain DSM 10897047770.761wgspatric47770
66792Lactobacillus crispatus DSM 108970GCA_014982905contigncbi47770

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes92.409no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no65.977no
69480spore-formingspore-formingAbility to form endo- or exosporesno91.345no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.327no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.5no
69480flagellatedmotile2+Ability to perform flagellated movementno93no

External links

@ref: 66979

culture collection no.: DSM 108970

straininfo link

  • @ref: 112351
  • straininfo: 402815

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66979Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108970Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108970)
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
112351Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402815.1