Strain identifier

BacDive ID: 160075

Type strain: No

Species: Lactobacillus crispatus

Strain Designation: Cla-CZ-47

Strain history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-47

NCBI tax ID(s): 47770 (species)

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General

@ref: 66979

BacDive-ID: 160075

DSM-Number: 108970

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Lactobacillus crispatus Cla-CZ-47 is a mesophilic, Gram-positive bacterium that was isolated from chicken colon content, adult.

NCBI tax id

  • NCBI tax id: 47770
  • Matching level: species

strain history

  • @ref: 66979
  • history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-47

doi: 10.13145/bacdive160075.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus crispatus
  • full scientific name: Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Eubacterium crispatum

@ref: 66979

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus crispatus

full scientific name: Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 emend. Cato et al. 1983

strain designation: Cla-CZ-47

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no93
12543892.409positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66979BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium58.pdf
66979WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 66979
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 98.6

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 91.345

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029016arginine-hydrolysis
6838029985L-glutamate-degradation
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380histidine arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380leucine arylamidase+3.4.11.1
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380beta-glucuronidase-3.2.1.31
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380glutamate decarboxylase-4.1.1.15
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66979--++--+---++-----++-++++++++/-+
66979--++-++---++-----+--++-+++/-+-+

Isolation, sampling and environmental information

isolation

  • @ref: 66979
  • sample type: chicken colon content, adult
  • geographic location: Geretsried (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 47.8589
  • longitude: 11.5894

Safety information

risk assessment

  • @ref: 66979
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66979
  • description: Lactobacillus crispatus strain ClaCZ47 16S ribosomal RNA gene, partial sequence
  • accession: MN055937.1
  • length: 1502
  • database: nuccore
  • NCBI tax ID: 47770

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus crispatus strain DSM 10897047770.761wgspatric47770
66792Lactobacillus crispatus DSM 108970GCA_014982905contigncbi47770

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes92.409no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no65.977no
125438spore-formingspore-formingAbility to form endo- or exosporesno91.345no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.327no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.5no
125438motile2+flagellatedAbility to perform flagellated movementno93no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes74.4
125439BacteriaNetmotilityAbility to perform movementyes66.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive70.5
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.6

External links

@ref: 66979

culture collection no.: DSM 108970

straininfo link

  • @ref: 112351
  • straininfo: 402815

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66979Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108970Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108970)
68380Automatically annotated from API rID32A
112351Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402815.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG