Strain identifier
BacDive ID: 160016
Type strain:
Species: Caldibacillus pasinlerensis
Strain Designation: P1
Strain history: <- Ataturk Univ., Dept. of Food Hygiene and Technol., Erzurum, Turkey; P1 <- G. Adiguzel and S. Akbulut
NCBI tax ID(s): 2703818 (species)
General
@ref: 66920
BacDive-ID: 160016
DSM-Number: 107529
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Caldibacillus pasinlerensis P1 is a thermophilic bacterium that was isolated from Hot Springs.
NCBI tax id
- NCBI tax id: 2703818
- Matching level: species
strain history
- @ref: 66920
- history: <- Ataturk Univ., Dept. of Food Hygiene and Technol., Erzurum, Turkey; P1 <- G. Adiguzel and S. Akbulut
doi: 10.13145/bacdive160016.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Caldibacillus
- species: Caldibacillus pasinlerensis
- full scientific name: Caldibacillus pasinlerensis (Baltaci et al. 2020) Gupta et al. 2020
synonyms
@ref synonym 20215 Bacillus pasinlerensis 20215 Pallidibacillus pasinlerensis
@ref: 66920
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Caldibacillus
species: Caldibacillus pasinlerensis
full scientific name: Caldibacillus pasinlerensis (Baltaci et al. 2020) Gupta et al. 2020
strain designation: P1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66920
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 66920
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 66920
- sample type: Hot Springs
- geographic location: Pasinler hot spring, Erzurum
- country: Turkey
- origin.country: TUR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_98366.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_5496;97_6627;98_8230;99_98366&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: MG768952
- Sequence Identity:
- Total samples: 6092
- soil counts: 3088
- aquatic counts: 530
- animal counts: 1851
- plant counts: 623
Sequence information
16S sequences
- @ref: 66920
- description: Bacillus sp. strain P1 16S ribosomal RNA gene, partial sequence
- accession: MG768952
- length: 1424
- database: ena
- NCBI tax ID: 1409
Genome sequences
- @ref: 66792
- description: Caldibacillus pasinlerensis P1
- accession: GCA_009996845
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2703818
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 81.914 | no |
gram-positive | yes | 90.88 | no |
anaerobic | no | 97.838 | no |
aerobic | yes | 81.119 | no |
halophile | yes | 61.809 | no |
spore-forming | yes | 95.509 | no |
glucose-util | yes | 84.929 | no |
thermophile | no | 56.836 | yes |
motile | yes | 88.927 | no |
glucose-ferment | no | 88.941 | no |
External links
@ref: 66920
culture collection no.: DSM 107529
straininfo link
- @ref: 112296
- straininfo: 403468
literature
- topic: Phylogeny
- Pubmed-ID: 32496183
- title: Bacillus pasinlerensis sp. nov., a thermophilic bacterium isolated from a hot spring in Turkey.
- authors: Baltaci MO, Ay H, Akbulut S, Adiguzel G, Albayrak S, Omeroglu MA, Ozkan H, Taskin M, Adiguzel A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004246
- year: 2020
- mesh: Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hot Springs/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
66920 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107529 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107529) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
112296 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403468.1 |