Strain identifier

BacDive ID: 160016

Type strain: Yes

Species: Caldibacillus pasinlerensis

Strain Designation: P1

Strain history: <- Ataturk Univ., Dept. of Food Hygiene and Technol., Erzurum, Turkey; P1 <- G. Adiguzel and S. Akbulut

NCBI tax ID(s): 2703818 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 66920

BacDive-ID: 160016

DSM-Number: 107529

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Caldibacillus pasinlerensis P1 is a thermophilic bacterium that was isolated from Hot Springs.

NCBI tax id

  • NCBI tax id: 2703818
  • Matching level: species

strain history

  • @ref: 66920
  • history: <- Ataturk Univ., Dept. of Food Hygiene and Technol., Erzurum, Turkey; P1 <- G. Adiguzel and S. Akbulut

doi: 10.13145/bacdive160016.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Caldibacillus
  • species: Caldibacillus pasinlerensis
  • full scientific name: Caldibacillus pasinlerensis (Baltaci et al. 2020) Gupta et al. 2020
  • synonyms

    @refsynonym
    20215Bacillus pasinlerensis
    20215Pallidibacillus pasinlerensis

@ref: 66920

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Caldibacillus

species: Caldibacillus pasinlerensis

full scientific name: Caldibacillus pasinlerensis (Baltaci et al. 2020) Gupta et al. 2020

strain designation: P1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 66920
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 66920
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 66920
  • sample type: Hot Springs
  • geographic location: Pasinler hot spring, Erzurum
  • country: Turkey
  • origin.country: TUR
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_98366.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_5496;97_6627;98_8230;99_98366&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: MG768952
  • Sequence Identity:
  • Total samples: 6092
  • soil counts: 3088
  • aquatic counts: 530
  • animal counts: 1851
  • plant counts: 623

Sequence information

16S sequences

  • @ref: 66920
  • description: Bacillus sp. strain P1 16S ribosomal RNA gene, partial sequence
  • accession: MG768952
  • length: 1424
  • database: ena
  • NCBI tax ID: 1409

Genome sequences

  • @ref: 66792
  • description: Caldibacillus pasinlerensis P1
  • accession: GCA_009996845
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2703818

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes81.914no
gram-positiveyes90.88no
anaerobicno97.838no
aerobicyes81.119no
halophileyes61.809no
spore-formingyes95.509no
glucose-utilyes84.929no
thermophileno56.836yes
motileyes88.927no
glucose-fermentno88.941no

External links

@ref: 66920

culture collection no.: DSM 107529

straininfo link

  • @ref: 112296
  • straininfo: 403468

literature

  • topic: Phylogeny
  • Pubmed-ID: 32496183
  • title: Bacillus pasinlerensis sp. nov., a thermophilic bacterium isolated from a hot spring in Turkey.
  • authors: Baltaci MO, Ay H, Akbulut S, Adiguzel G, Albayrak S, Omeroglu MA, Ozkan H, Taskin M, Adiguzel A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004246
  • year: 2020
  • mesh: Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hot Springs/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66920Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107529Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107529)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112296Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403468.1