Strain identifier
BacDive ID: 16
Type strain:
Species: Acetobacter orientalis
Strain Designation: 21F-2
Culture col. no.: DSM 15550, IFO 16606, JCM 1195, NBRC 16606, NRIC 0481
General
@ref: 5996
BacDive-ID: 16
DSM-Number: 15550
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Acetobacter orientalis 21F-2 is a mesophilic bacterium that was isolated from canna flower, Canna hybrida.
strain history: <- IFO
doi: 10.13145/bacdive16.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter orientalis
- full scientific name: Acetobacter orientalis Lisdiyanti et al. 2002
@ref: 5996
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter orientalis
full scientific name: Acetobacter orientalis Lisdiyanti et al. 2002
strain designation: 21F-2
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5996 | ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium989.pdf | |
33782 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5996 | positive | growth | 30 | mesophilic |
33782 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
- @ref: 5996
- sample type: canna flower, Canna hybrida
- host species: Canna hybrida
- country: Indonesia
- origin.country: IDN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Flower |
Safety information
risk assessment
- @ref: 5996
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter orientalis gene for 16S rRNA, partial sequence, strain: NBRC 16606 | AB681086 | 1415 | ena | 146474 |
5996 | Acetobacter orientalis gene for 16S ribosomal RNA, strain: 21F-2 | AB052706 | 1401 | ena | 146474 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter orientalis FAN1 | GCA_003966365 | complete | ncbi | 146474 |
66792 | Acetobacter orientalis NBRC 16606 | GCA_007989335 | contig | ncbi | 146474 |
66792 | Acetobacter orientalis NRIC 0481 21F-2 | GCA_000963965 | scaffold | ncbi | 1307913 |
66792 | Acetobacter orientalis DsW_061 | GCA_002153735 | contig | ncbi | 146474 |
66792 | Acetobacter orientalis DmW_045 | GCA_002153475 | contig | ncbi | 146474 |
66792 | Acetobacter orientalis DmW_048 | GCA_002153685 | contig | ncbi | 146474 |
66792 | Acetobacter orientalis UBA5402 | GCA_002409655 | scaffold | ncbi | 146474 |
66792 | Acetobacter orientalis strain DmW_045 | 146474.4 | wgs | patric | 146474 |
66792 | Acetobacter orientalis strain DmW_048 | 146474.5 | wgs | patric | 146474 |
66792 | Acetobacter orientalis strain DsW_061 | 146474.6 | wgs | patric | 146474 |
66792 | Acetobacter orientalis strain FAN1 | 146474.9 | wgs | patric | 146474 |
66792 | Acetobacter orientalis strain NBRC 16606 | 146474.10 | wgs | patric | 146474 |
66792 | Acetobacter orientalis strain UBA5402 | 146474.8 | wgs | patric | 146474 |
External links
@ref: 5996
culture collection no.: DSM 15550, IFO 16606, JCM 1195, NBRC 16606, NRIC 0481
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/371156 |
20218 | http://www.straininfo.net/strains/301086 |
20218 | http://www.straininfo.net/strains/5472 |
20218 | http://www.straininfo.net/strains/336916 |
20218 | http://www.straininfo.net/strains/336913 |
20218 | http://www.straininfo.net/strains/336914 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5996 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15550) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15550 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33782 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4808 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |