Strain identifier

BacDive ID: 16

Type strain: Yes

Species: Acetobacter orientalis

Strain Designation: 21F-2

Culture col. no.: DSM 15550, IFO 16606, JCM 1195, NBRC 16606, NRIC 0481

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General

@ref: 5996

BacDive-ID: 16

DSM-Number: 15550

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Acetobacter orientalis 21F-2 is a mesophilic bacterium that was isolated from canna flower, Canna hybrida.

strain history: <- IFO

doi: 10.13145/bacdive16.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter orientalis
  • full scientific name: Acetobacter orientalis Lisdiyanti et al. 2002

@ref: 5996

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter orientalis

full scientific name: Acetobacter orientalis Lisdiyanti et al. 2002

strain designation: 21F-2

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5996ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium989.pdf
33782MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5996positivegrowth30mesophilic
33782positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5996
  • sample type: canna flower, Canna hybrida
  • host species: Canna hybrida
  • country: Indonesia
  • origin.country: IDN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Flower

Safety information

risk assessment

  • @ref: 5996
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter orientalis gene for 16S rRNA, partial sequence, strain: NBRC 16606AB6810861415ena146474
5996Acetobacter orientalis gene for 16S ribosomal RNA, strain: 21F-2AB0527061401ena146474

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter orientalis FAN1GCA_003966365completencbi146474
66792Acetobacter orientalis NBRC 16606GCA_007989335contigncbi146474
66792Acetobacter orientalis NRIC 0481 21F-2GCA_000963965scaffoldncbi1307913
66792Acetobacter orientalis DsW_061GCA_002153735contigncbi146474
66792Acetobacter orientalis DmW_045GCA_002153475contigncbi146474
66792Acetobacter orientalis DmW_048GCA_002153685contigncbi146474
66792Acetobacter orientalis UBA5402GCA_002409655scaffoldncbi146474
66792Acetobacter orientalis strain DmW_045146474.4wgspatric146474
66792Acetobacter orientalis strain DmW_048146474.5wgspatric146474
66792Acetobacter orientalis strain DsW_061146474.6wgspatric146474
66792Acetobacter orientalis strain FAN1146474.9wgspatric146474
66792Acetobacter orientalis strain NBRC 16606146474.10wgspatric146474
66792Acetobacter orientalis strain UBA5402146474.8wgspatric146474

External links

@ref: 5996

culture collection no.: DSM 15550, IFO 16606, JCM 1195, NBRC 16606, NRIC 0481

straininfo link

@refpassport
20218http://www.straininfo.net/strains/371156
20218http://www.straininfo.net/strains/301086
20218http://www.straininfo.net/strains/5472
20218http://www.straininfo.net/strains/336916
20218http://www.straininfo.net/strains/336913
20218http://www.straininfo.net/strains/336914

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5996Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15550)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15550
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33782Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4808
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)