Strain identifier
BacDive ID: 159922
Type strain:
Species: Arthrobacter sp.
Strain Designation: R5
Strain history: <- S. Yin, Yangzhou Univ., Coll. of Environmental Science and Eng., Jiangsu Prov., China; R5 <- T. Gu
NCBI tax ID(s): 1667 (species)
version 8.1 (current version)
General
@ref: 66826
BacDive-ID: 159922
DSM-Number: 26978
keywords: 16S sequence, Bacteria, mesophilic
description: Arthrobacter sp. R5 is a mesophilic bacterium that was isolated from citrus soil.
NCBI tax id
- NCBI tax id: 1667
- Matching level: species
strain history
- @ref: 66826
- history: <- S. Yin, Yangzhou Univ., Coll. of Environmental Science and Eng., Jiangsu Prov., China; R5 <- T. Gu
doi: 10.13145/bacdive159922.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 66826
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
strain designation: R5
type strain: no
Culture and growth conditions
culture medium
- @ref: 66826
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 66826
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66826
- sample type: citrus soil
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_130.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_115;99_130&stattab=map
- Last taxonomy: Pseudarthrobacter
- 16S sequence: KC514135
- Sequence Identity:
- Total samples: 1526
- soil counts: 822
- aquatic counts: 109
- animal counts: 156
- plant counts: 439
Sequence information
16S sequences
- @ref: 66826
- description: Arthrobacter sp. R5 16S ribosomal RNA gene, partial sequence
- accession: KC514135
- length: 1468
- database: ena
- NCBI tax ID: 1300149
GC content
- @ref: 66826
- GC-content: 65.9
External links
@ref: 66826
culture collection no.: DSM 26978
straininfo link
- @ref: 112204
- straininfo: 400719
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66826 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26978 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26978) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
112204 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400719.1 |