Strain identifier

BacDive ID: 159908

Type strain: Yes

Species: Staphylococcus lloydii

Strain Designation: 23_2_7_LY

Strain history: <- K. Fountain, Univ. of Bath; 23_2_7_LY

NCBI tax ID(s): 2781774 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 66812

BacDive-ID: 159908

DSM-Number: 111639

keywords: genome sequence, Bacteria, mesophilic, Gram-positive

description: Staphylococcus lloydii 23_2_7_LY is a mesophilic, Gram-positive bacterium that was isolated from Skin carriage of Livingstone's fruit bat .

NCBI tax id

  • NCBI tax id: 2781774
  • Matching level: species

strain history

  • @ref: 66812
  • history: <- K. Fountain, Univ. of Bath; 23_2_7_LY

doi: 10.13145/bacdive159908.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lloydii
  • full scientific name: Staphylococcus lloydii Fountain et al. 2021

@ref: 66812

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus lloydii

full scientific name: Staphylococcus lloydii Fountain et al. 2021

strain designation: 23_2_7_LY

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 66812
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 66812
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.741
69481no95

Isolation, sampling and environmental information

isolation

  • @ref: 66812
  • sample type: Skin carriage of Livingstone's fruit bat (Pteropus livingstonii)
  • geographic location: Jersey, Channel Islands
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

Sequence information

Genome sequences

  • @ref: 66792
  • description: Staphylococcus lloydii 23_2_7_LY
  • accession: GCA_015775975
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 2781774

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno95no
flagellatedno90.804no
gram-positiveyes91.568no
anaerobicno99.379no
aerobicyes91.699no
halophileyes96.742no
spore-formingno90.797no
thermophileno99.867no
glucose-utilyes89.338no
motileno86.565no
glucose-fermentyes79.936no

External links

@ref: 66812

culture collection no.: DSM 111639, NCTC 14453

straininfo link

  • @ref: 112190
  • straininfo: 406064

literature

  • topic: Genetics
  • Pubmed-ID: 33734958
  • title: Closed genome sequences of Staphylococcus lloydii sp. nov. and Staphylococcus durrellii sp. nov. isolated from captive fruit bats (Pteropus livingstonii).
  • authors: Fountain K, Gibbon MJ, Loeffler A, Feil EJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004715
  • year: 2021
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66812Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-111639Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111639)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112190Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406064.1