Strain identifier
BacDive ID: 159908
Type strain:
Species: Staphylococcus lloydii
Strain Designation: 23_2_7_LY
Strain history: <- K. Fountain, Univ. of Bath; 23_2_7_LY
NCBI tax ID(s): 2781774 (species)
General
@ref: 66812
BacDive-ID: 159908
DSM-Number: 111639
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Staphylococcus lloydii 23_2_7_LY is a mesophilic, Gram-positive bacterium that was isolated from Skin carriage of Livingstone's fruit bat .
NCBI tax id
- NCBI tax id: 2781774
- Matching level: species
strain history
- @ref: 66812
- history: <- K. Fountain, Univ. of Bath; 23_2_7_LY
doi: 10.13145/bacdive159908.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus lloydii
- full scientific name: Staphylococcus lloydii Fountain et al. 2021
@ref: 66812
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus lloydii
full scientific name: Staphylococcus lloydii Fountain et al. 2021
strain designation: 23_2_7_LY
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 66812
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 66812
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.741 |
69481 | no | 95 |
Isolation, sampling and environmental information
isolation
- @ref: 66812
- sample type: Skin carriage of Livingstone's fruit bat (Pteropus livingstonii)
- geographic location: Jersey, Channel Islands
- country: United Kingdom
- origin.country: GBR
- continent: Europe
Sequence information
Genome sequences
- @ref: 66792
- description: Staphylococcus lloydii 23_2_7_LY
- accession: GCA_015775975
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2781774
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 95 | no |
flagellated | no | 90.804 | no |
gram-positive | yes | 91.568 | no |
anaerobic | no | 99.379 | no |
aerobic | yes | 91.699 | no |
halophile | yes | 96.742 | no |
spore-forming | no | 90.797 | no |
thermophile | no | 99.867 | no |
glucose-util | yes | 89.338 | no |
motile | no | 86.565 | no |
glucose-ferment | yes | 79.936 | no |
External links
@ref: 66812
culture collection no.: DSM 111639, NCTC 14453
straininfo link
- @ref: 112190
- straininfo: 406064
literature
- topic: Genetics
- Pubmed-ID: 33734958
- title: Closed genome sequences of Staphylococcus lloydii sp. nov. and Staphylococcus durrellii sp. nov. isolated from captive fruit bats (Pteropus livingstonii).
- authors: Fountain K, Gibbon MJ, Loeffler A, Feil EJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004715
- year: 2021
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
66812 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111639 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111639) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
112190 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406064.1 |