Strain identifier

BacDive ID: 159903

Type strain: Yes

Species: Acidiferrimicrobium australe

Strain Designation: RGM 2506, USS-CCA1

Strain history: <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1 <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1

NCBI tax ID(s): 2664430 (species)

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General

@ref: 66807

BacDive-ID: 159903

DSM-Number: 106828

keywords: genome sequence, Bacteria, mesophilic

description: Acidiferrimicrobium australe RGM 2506 is a mesophilic bacterium that was isolated from Solid plates.

NCBI tax id

  • NCBI tax id: 2664430
  • Matching level: species

strain history

  • @ref: 66807
  • history: <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1 <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1

doi: 10.13145/bacdive159903.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Acidimicrobiia
  • order: Acidimicrobiales
  • family: Acidimicrobiaceae
  • genus: Acidiferrimicrobium
  • species: Acidiferrimicrobium australe
  • full scientific name: Acidiferrimicrobium australe González et al. 2020

@ref: 66807

domain: Bacteria

phylum: Actinobacteria

class: Acidimicrobiia

order: Acidimicrobiales

family: Acidimicrobiaceae

genus: Acidiferrimicrobium

species: Acidiferrimicrobium australe

full scientific name: Acidiferrimicrobium australe Gonzalez et al. 2020

strain designation: RGM 2506, USS-CCA1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 66807
  • name: ACTINOBACTERIA MEDIUM (DSMZ Medium 1688)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1688
  • composition: Name: ACTINOBACTERIA MEDIUM (DSMZ Medium 1688) Composition: Glucose 0.9 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Na2SO4 0.15 g/l Yeast extract 0.1 g/l KCl 0.05 g/l KH2PO4 0.05 g/l Ca(NO3)2 x 4 H2O 0.015 g/l Distilled water

culture temp

  • @ref: 66807
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6836817632nitrate-reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole-
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
68382alkaline phosphatase-3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
66807---+/--+++/-------------
66807--+/-+/--+++/-+/-+/-++/--+/-------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARANO2N2
66807----------------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
66807-----+/--+----------+/--

Isolation, sampling and environmental information

isolation

  • @ref: 66807
  • sample type: Solid plates
  • geographic location: Curanilahue (37° 35' 49.9'' N, 73° 13' 21,9'' W)
  • country: Chile
  • origin.country: CHL
  • continent: Middle and South America
  • latitude: -37.5972
  • longitude: -73.2228

Sequence information

Genome sequences

  • @ref: 66792
  • description: Acidiferrimicrobium australe USS-CCA1
  • accession: GCA_009697115
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2664430

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes51.121no
flagellatedno97.455no
gram-positiveyes83.498no
anaerobicno96.052no
aerobicyes85.173no
halophileno95.557no
spore-formingno80.178no
glucose-utilyes84.059no
thermophileno95.104yes
glucose-fermentno89.157yes

External links

@ref: 66807

culture collection no.: DSM 106828

straininfo link

  • @ref: 112186
  • straininfo: 400332

literature

  • topic: Phylogeny
  • Pubmed-ID: 32375942
  • title: Acidiferrimicrobium australe gen. nov., sp. nov., an acidophilic and obligately heterotrophic, member of the Actinobacteria that catalyses dissimilatory oxido-reduction of iron isolated from metal-rich acidic water in Chile.
  • authors: Gonzalez D, Huber KJ, Tindall B, Hedrich S, Rojas-Villalobos C, Quatrini R, Dinamarca MA, Ibacache-Quiroga C, Schwarz A, Canales C, Nancucheo I
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004179
  • year: 2020
  • mesh: Acids, Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Heterotrophic Processes, Hydrogen-Ion Concentration, Iron/*metabolism, *Mining, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66807Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106828Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106828)
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
112186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400332.1