Strain identifier

BacDive ID: 159886

Type strain: Yes

Species: Euzebya rosea

NCBI tax ID(s): 2052804 (species)

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General

@ref: 66649

BacDive-ID: 159886

DSM-Number: 104446

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped, colony-forming

description: Euzebya rosea DSM 104446 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 2052804
  • Matching level: species

doi: 10.13145/bacdive159886.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Nitriliruptoria
  • order: Euzebyales
  • family: Euzebyaceae
  • genus: Euzebya
  • species: Euzebya rosea
  • full scientific name: Euzebya rosea Yin et al. 2018

@ref: 66649

domain: Bacteria

phylum: Actinobacteria

class: Nitriliruptoria

order: Euzebyales

family: Euzebyaceae

genus: Euzebya

species: Euzebya rosea

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
66649positive1.5-4.0 µm0.4 µmrod-shapedno
69480positive100

colony morphology

  • @ref: 66649
  • colony size: 1 mm
  • colony color: light-pink
  • colony shape: circular
  • medium used: Marine agar (MA)

Culture and growth conditions

culture medium

  • @ref: 66649
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66649positivegrowth15-45
66649positiveoptimum25-30mesophilic

culture pH

@refabilitytypepHPH range
66649positiveoptimum6.0-7.0
66649positivegrowth6.0-9.0alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 66649
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
66649no
69480no93.889

halophily

@refsaltgrowthtested relationconcentration
66649NaClpositivegrowth0.5-5.0 %(w/v)
66649NaClpositiveoptimum1.0-4.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6664932323glucuronamide+oxidation
6664975193tetrazolium violet+oxidation
6664913705acetoacetate+/-oxidation
6664915748D-glucuronate+/-oxidation
6664915971L-histidine+/-oxidation
6664917464L-galactonic acid gamma-lactone+/-oxidation
6664918024D-galacturonic acid+/-oxidation
6664950694minocycline+/-oxidation
6664975198tetrazolium blue+/-oxidation
6664978697D-fructose 6-phosphate+/-oxidation

enzymes

@refvalueactivityec
66649acid phosphatase-3.1.3.2
66649alpha-fucosidase-3.2.1.51
66649alpha-galactosidase-3.2.1.22
66649alpha-glucosidase-3.2.1.20
66649alpha-mannosidase-3.2.1.24
66649beta-glucosidase-3.2.1.21
66649beta-glucuronidase-3.2.1.31
66649N-acetyl-beta-glucosaminidase-3.2.1.52
66649alkaline phosphatase+3.1.3.1
66649beta-galactosidase+3.2.1.23
66649catalase+1.11.1.6
66649cystine arylamidase+3.4.11.3
66649esterase (C 4)+
66649esterase Lipase (C 8)+
66649leucine arylamidase+3.4.11.1
66649lipase (C 14)+
66649naphthol-AS-BI-phosphohydrolase+
66649valine arylamidase+
66649alpha-chymotrypsin+/-3.4.21.1
66649trypsin+/-3.4.21.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66649C14:01.4
    66649C17:01.92
    66649C16:010.73
    66649C17:1 w8c15.4
    66649C16:1 w7c / iso-C15:0 2OH27.3
    66649C16:1 iso H3.2
    6664910-methyl C17:03.2
    66649C17:1 w6c7.1
    66649C16:0 iso7.6
    66649C15:1 w6c7.7
    66649C15:09.9
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • incubation temperature: 25
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • method/protocol: Kämpfer & Kroppenstedt 1996
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 66649
  • sample type: surface seawater
  • geographic location: East China Sea
  • latitude: 32.0006
  • longitude: 123.599
  • enrichment culture: MA
  • enrichment culture duration: 7 days
  • enrichment culture temperature: 25
  • isolation procedure: conventional dilution-plating technique

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_12421.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1403;96_6339;97_7605;98_9357;99_12421&stattab=map
  • Last taxonomy: Euzebya rosea subclade
  • 16S sequence: KY038374
  • Sequence Identity:
  • Total samples: 2793
  • soil counts: 249
  • aquatic counts: 2435
  • animal counts: 98
  • plant counts: 11

Sequence information

16S sequences

  • @ref: 66649
  • description: Euzebya sp. strain DSW09 16S ribosomal RNA gene, partial sequence
  • accession: KY038374
  • length: 1491
  • database: ena
  • NCBI tax ID: 1971409

Genome sequences

  • @ref: 66792
  • description: Euzebya sp. DSW09
  • accession: 2052804.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 2052804

GC content

  • @ref: 66649
  • GC-content: 71.30
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno80no
motileno53.861yes
gram-positiveyes82.855yes
anaerobicno98.334yes
aerobicyes89.943yes
halophileno86.688no
spore-formingno84.278yes
glucose-utilyes84.886no
flagellatedno91.515yes
thermophileno95.82yes
glucose-fermentno92.259no

External links

@ref: 66649

culture collection no.: DSM 104446, MCCC 1k03290, DSW 09

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30010523Euzebya rosea sp. nov., a rare actinobacterium isolated from the East China Sea and analysis of two genome sequences in the genus Euzebya.Yin Q, Zhang L, Song ZM, Wu Y, Hu ZL, Zhang XH, Zhang Y, Yu M, Xu YInt J Syst Evol Microbiol10.1099/ijsem.0.0029172018Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Genetics31820112Comparative genomics analysis of Nitriliruptoria reveals the genomic differences and salt adaptation strategies.Chen DD, Tian Y, Jiao JY, Zhang XT, Zhang YG, Dong ZY, Xiong MJ, Xiao M, Shu WS, Li WJExtremophiles10.1007/s00792-019-01150-32019Actinobacteria, Genomics, Phylogeny, *Salt TolerancePhylogeny

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66649Qi Yin, Lv Zhang, Zhi-Man Song, Yanhong Wu, Zhang-Li Hu, Xiao-Hua Zhang, Yu Zhang, Min Yu and Ying XuEuzebya rosea sp. nov., a rare actinobacterium isolated from the East China Sea and analysis of two genome sequences in the genus Euzebya10.1099/ijsem.0.002917IJSEM 68: 2900-2905 201830010523
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes