General

@ref: 66631

BacDive-ID: 159878

keywords: 16S sequence, aerobe, mesophilic, Gram-positive, rod-shaped

description: Rhodococcus electrodiphilus JC435 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from marine coral reef.

NCBI tax id

• NCBI tax id: 1915243
• Matching level: species

doi: 10.13145/bacdive159878.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• genus: Rhodococcus
• species: Rhodococcus electrodiphilus
• full scientific name: Rhodococcus electrodiphilus Ramaprasad et al. 2018

@ref: 66631

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus electrodiphilus

strain designation: JC435

type strain: yes

Morphology

cell morphology

colony morphology

• @ref: 66631
• colony color: dark-red
• medium used: Marine agar (MA)

Culture and growth conditions

culture medium

• @ref: 66631
• name: Marine agar (MA)
• growth: yes

culture temp

culture pH

Physiology and metabolism

oxygen tolerance

• @ref: 66631
• oxygen tolerance: aerobe

spore formation

• @ref: 66631
• spore formation: no

halophily

observation

• @ref: 66631
• observation: thin and filamentous showing elementary branching later fragmenting into rod-to coccoid-shaped elements

metabolite utilization

enzymes

fatty acid profile

• fatty acids

  @ref	fatty acid	percentage
  66631	C17:0 10-methyl	3
  66631	C18:1 w9c	12
  66631	C16:0	25
  66631	C15:1 w5c	1.3
  66631	C16:0 10-methyl / iso-C17:1w8c	1.3
  66631	C18:0	1.7
  66631	C18:0 10-methyl	12.2
  66631	C17:0	2.9
  66631	C16:1 w6c / C16:1 w7c	27.9
  66631	C14:0	3.4
  66631	C16:1 w8c	4.8

• type of FA analysis: whole cell analysis
• incubation medium: MB
• incubation temperature: 28
• incubation time: 3
• software version: Sherlock 6.0
• library/peak naming table: RTSBA6
• system: MIS MIDI
• method/protocol: Sasser, 1990
• cutoff value:

Isolation, sampling and environmental information

isolation

• @ref: 66631
• sample type: marine coral reef
• geographic location: Shivrajpur coast, Kachhighadi, Gujarat
• country: India
• origin.country: IND
• continent: Asia
• latitude: 22.5769
• longitude: 68.9697
• enrichment culture: MA
• enrichment culture duration: 7 days
• enrichment culture temperature: 25

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_2826.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_1792;98_2191;99_2826&stattab=map
• Last taxonomy: Rhodococcus
• 16S sequence: LT630357
• Sequence Identity:
• Total samples: 3141
• soil counts: 1219
• aquatic counts: 725
• animal counts: 950
• plant counts: 247

Sequence information

16S sequences

• @ref: 66631
• description: Rhodococcus sp. JC435 partial 16S rRNA gene, strain JC435
• accession: LT630357
• length: 1474
• database: ena
• NCBI tax ID: 1915243

GC content

• @ref: 66631
• GC-content: 69.80
• method: high performance liquid chromatography (HPLC)

External links

@ref: 66631

culture collection no.: KCTC 39856, LMG 29881, MCC 3659

literature

• topic: Phylogeny
• Pubmed-ID: 29957174
• title: Rhodococcus electrodiphilus sp. nov., a marine electro active actinobacterium isolated from coral reef.
• authors: Ramaprasad EVV, Mahidhara G, Sasikala C, Ramana CV
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.002895
• year: 2018
• mesh: Bacterial Typing Techniques, Base Composition, *Coral Reefs, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Mycolic Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Transcriptome

Reference