Strain identifier

BacDive ID: 159852

Type strain: Yes

Species: Streptomyces lichenis

Strain Designation: LCR6-01

NCBI tax ID(s): 2306967 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 8.1 (current version)

General

@ref: 66760

BacDive-ID: 159852

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, colony-forming

description: Streptomyces lichenis LCR6-01 is an aerobe, spore-forming, mesophilic bacterium that forms filamentous colonies and was isolated from a lichen sample, Dirinaria sp..

NCBI tax id

  • NCBI tax id: 2306967
  • Matching level: species

doi: 10.13145/bacdive159852.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lichenis
  • full scientific name: Streptomyces lichenis Saeng-in et al. 2018

@ref: 66760

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lichenis

strain designation: LCR6-01

type strain: yes

Morphology

colony morphology

  • @ref: 66760
  • colony color: pale greenish yellow to greyish yellowish green
  • colony shape: filamentous
  • medium used: agar media

Culture and growth conditions

culture medium

@refnamegrowth
66760agar mediayes
66760ISP 2yes
66760ISP 3yes
66760ISP 4yes
66760ISP 5yes
66760ISP 6yes
66760ISP 7yes
66760Nutrient agar (NA)yes

culture temp

@refgrowthtypetemperaturerange
66760positiveoptimum30mesophilic
66760positivegrowth20-40

culture pH

@refabilitytypepHPH range
66760positivegrowth5-9alkaliphile
66760positiveoptimum7-9

Physiology and metabolism

oxygen tolerance

  • @ref: 66760
  • oxygen tolerance: aerobe

spore formation

  • @ref: 66760
  • spore description: Cylindrical spores, with smooth surface, are arranged in rectiflexibiles chains.
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 66760
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %(w/v)

observation

  • @ref: 66760
  • observation: The substrate mycelia are brilliant orange to brilliant yellow in colour.

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6676016634raffinose-assimilation
6676017268myo-inositol-assimilation
6676017992sucrose-assimilation
6676028053melibiose-assimilation
6676030849L-arabinose-assimilation
6676062345L-rhamnose-assimilation
6676062968cellulose-assimilation
6676016024D-mannose+assimilation
6676016899D-mannitol+assimilation
6676017057cellobiose+assimilation
6676017234glucose+assimilation
6676017754glycerol+assimilation
6676028260galactose+assimilation
6676028757fructose+assimilation
6676065327D-xylose+assimilation
667605291gelatin+degradation
66760skimmed milk+degradation
6676028017starch-hydrolysis
6676017632nitrate-reduction

enzymes

@refvalueactivityec
66760acid phosphatase-3.1.3.2
66760alpha-fucosidase-3.2.1.51
66760alpha-galactosidase-3.2.1.22
66760alpha-glucosidase-3.2.1.20
66760alpha-mannosidase-3.2.1.24
66760beta-galactosidase-3.2.1.23
66760beta-glucuronidase-3.2.1.31
66760N-acetyl-beta-glucosaminidase-3.2.1.52
66760naphthol-AS-BI-phosphohydrolase-
66760alkaline phosphatase+3.1.3.1
66760alpha-chymotrypsin+3.4.21.1
66760beta-glucosidase+3.2.1.21
66760cystine arylamidase+3.4.11.3
66760esterase (C 4)+
66760esterase Lipase (C 8)+
66760leucine arylamidase+3.4.11.1
66760lipase (C 14)+
66760trypsin+3.4.21.4
66760valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66760C13:0 anteiso0.5
    66760C17:00.6
    66760C17:1 w8c0.9
    66760C13:0 iso0.9
    66760C17:1 anteiso w9c1.1
    66760C14:01.5
    66760C16:0 10-methyl / iso-C17:1 w9c1.6
    66760C14:0 iso13.6
    66760C16:0 iso15.3
    66760C15:0 iso16.4
    66760C17:0 iso2.1
    66760C16:1 iso H2.3
    66760C17:0 anteiso2.9
    66760C15:0 anteiso23.3
    66760C16:1 w6c / C16:1 w7c4.9
    66760C16:08.5
  • type of FA analysis: whole cell analysis
  • incubation medium: yeast-dextrose broth
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 6
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6 6.21
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 66760
  • sample type: a lichen sample, Dirinaria sp.
  • host species: Dirinaria sp.
  • geographic location: Chiang Rai Province
  • country: Thailand
  • origin.country: THA
  • continent: Asia
  • latitude: 12.7492
  • longitude: 101.571
  • enrichment culture: Arginine-vitamin agar plates

isolation source categories

Cat1Cat2Cat3
#Host#Other#Lichen
#Host#Fungi

Sequence information

16S sequences

  • @ref: 66760
  • description: Streptomyces lichenis LCR6-01 gene for 16S ribosomal RNA, partial sequence
  • accession: LC360144
  • length: 1441
  • database: ena
  • NCBI tax ID: 2306967

Genome sequences

  • @ref: 66792
  • description: Streptomyces lichenis LCR6-01
  • accession: GCA_023218175
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2306967

GC content

  • @ref: 66760
  • GC-content: 74.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.817no
gram-positiveyes90.298no
anaerobicno98.892no
aerobicyes89.926yes
halophileno95.183no
spore-formingyes95.459yes
motileno94.045no
glucose-fermentno90.784no
thermophileno98.463yes
glucose-utilyes90.246yes

External links

@ref: 66760

culture collection no.: KCTC 39908, TISTR 2500

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30303477Streptomyces lichenis sp. nov., isolated from lichen.Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0030522018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny36282570Streptomyces solincola sp. nov., isolated from soil in Malaysia.Lee ZY, Ng ZY, Mohd Nor MN, Teo WFA, Tan GYAInt J Syst Evol Microbiol10.1099/ijsem.0.0055942022RNA, Ribosomal, 16S/genetics, *Phosphatidylethanolamines, Phylogeny, Diaminopimelic Acid/analysis, Soil, Galactose, Ribose, Cardiolipins, Sodium Chloride, Agar, Urease/genetics, Malaysia, Base Composition, Fatty Acids/chemistry, DNA, Bacterial/genetics, Bacterial Typing Techniques, Phospholipids/analysis, Sequence Analysis, DNA, *Streptomyces, Glucose, Phosphatidylcholines, Phosphatidylinositols/analysis, NucleotidesTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66760Patcharin Saeng-in, Wongsakorn Phongsopitanun, Ancharida Savarajara, Somboon TanasupawatStreptomyces lichenis sp. nov., isolated from lichen10.1099/ijsem.0.003052IJSEM 68: 3641-3646 201830303477
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes