Strain identifier

BacDive ID: 159835

Type strain: Yes

Species: Acuticoccus kandeliae

Strain Designation: J103

NCBI tax ID(s): 2073160 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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version 6 (current version)

General

@ref: 66707

BacDive-ID: 159835

DSM-Number: 104434

keywords: colony-forming, ovoid-shaped, Gram-negative, Bacteria, 16S sequence

description: Acuticoccus kandeliae J103 is a Gram-negative, ovoid-shaped Proteobacterium that forms circular colonies and was isolated from rhizosphere soil of the mangrove plant Kandelia.

NCBI tax id

  • NCBI tax id: 2073160
  • Matching level: species

doi: 10.13145/bacdive159835.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Amorphaceae
  • genus: Acuticoccus
  • species: Acuticoccus kandeliae
  • full scientific name: Acuticoccus kandeliae Yin et al. 2018

@ref: 66707

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Amorphaceae

genus: Acuticoccus

species: Acuticoccus kandeliae

strain designation: J103

type strain: yes

Morphology

cell morphology

  • @ref: 66707
  • gram stain: negative
  • cell length: 1.0-1.5 ┬Ám
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 66707
  • colony color: light orange
  • colony shape: circular
  • incubation period: 3-5 days
  • medium used: Marine agar (MA)

Culture and growth conditions

culture medium

@refnamegrowth
66707Marine agar (MA)yes
66707marine brothyes

culture temp

@refgrowthtypetemperaturerange
66707positivegrowth20-30
66707positiveoptimum25-30mesophilic

culture pH

@refabilitytypepH
66707positiveoptimum6
66707positivegrowth6.0-9.0

Physiology and metabolism

spore formation

  • @ref: 66707
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
66707NaClpositivegrowth0.5-5.0 %(w/v)
66707NaClpositiveoptimum1.0-2.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
667074853esculin-assimilation
667075291gelatin-assimilation
6670716024D-mannose-assimilation
6670716467L-arginine-assimilation
6670716828L-tryptophan-assimilation
6670716899D-mannitol-assimilation
6670717128adipate-assimilation
6670717306maltose-assimilation
6670717634D-glucose-assimilation
6670718401phenylacetate-assimilation
6670725115malate-assimilation
6670727689decanoate-assimilation
6670730849L-arabinose-assimilation
6670732032potassium gluconate-assimilation
6670753258sodium citrate-assimilation
6670759640N-acetylglucosamine-assimilation
6670716199urea+hydrolysis
6670753423tween 40+hydrolysis
6670753425tween 60+hydrolysis
6670763043potassium nitrate+reduction

enzymes

@refvalueactivityec
66707alpha-chymotrypsin-3.4.21.1
66707alpha-fucosidase-3.2.1.51
66707alpha-galactosidase-3.2.1.22
66707alpha-glucosidase-3.2.1.20
66707alpha-mannosidase-3.2.1.24
66707beta-galactosidase-3.2.1.23
66707beta-glucosidase-3.2.1.21
66707beta-glucuronidase-3.2.1.31
66707cystine arylamidase-3.4.11.3
66707lipase (C 14)-
66707N-acetyl-beta-glucosaminidase-3.2.1.52
66707valine arylamidase-
66707acid phosphatase+3.1.3.2
66707alkaline phosphatase+3.1.3.1
66707catalase+1.11.1.6
66707esterase (C 4)+
66707esterase Lipase (C 8)+
66707leucine arylamidase+3.4.11.1
66707naphthol-AS-BI-phosphohydrolase+
66707trypsin+3.4.21.4

Isolation, sampling and environmental information

isolation

  • @ref: 66707
  • sample type: rhizosphere soil of the mangrove plant Kandelia
  • host species: Kandelia candel
  • sampling date: 2015-10-10
  • geographic location: Mai Po Inner Deep Bay Ramsar Site
  • country: Hong Kong
  • origin.country: HKG
  • continent: Asia
  • latitude: 22.8464
  • longitude: 114.036
  • enrichment culture: marine agar 2216
  • isolation procedure: isolated by using a conventional dilution-plating technique on marine agar 2216.

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Host Body-Site#Plant#Rhizosphere
#Host#Plants#Shrub (Scrub)
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 66707
  • description: Acuticoccus sp. strain J103 16S ribosomal RNA gene, partial sequence
  • accession: KY038377
  • length: 1430
  • database: ena
  • NCBI tax ID: 2073160

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acuticoccus kandeliae J103GCA_003073115contigncbi2073160
66792Acuticoccus sp. J1032073160.3wgspatric2073160
66792Acuticoccus kandeliae J1032832851782draftimg2073160

GC content

  • @ref: 66707
  • GC-content: 68.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 66707

culture collection no.: DSM 104434, MCCC 1K03288

Reference

@idauthorstitledoi/urljournalpubmed
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
66707Qi Yin, Jinyou Liang, Lv Zhang, Ke Ma, Zhang-Li Hu, Yu Zhang, Ying XuAcuticoccus kandeliae sp. nov., isolated from rhizosphere soil of the mangrove plant Kandelia, and emended description of Acuticoccus yangtzensis10.1099/ijsem.0.002990IJSEM 68: 3316-3321 201830141770