Strain identifier

BacDive ID: 159832

Type strain: Yes

Species: Companilactobacillus nuruki

Strain Designation: SYF10-1a

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General

@ref: 66698

BacDive-ID: 159832

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Companilactobacillus nuruki SYF10-1a is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Nuruk. A Korean fermentation starter.

doi: 10.13145/bacdive159832.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus nuruki
  • full scientific name: Companilactobacillus nuruki (Heo et al. 2018) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus nuruki

@ref: 66698

domain: Bacteria

phylum: Not assigned to order

class: Not assigned to order

order: Not assigned to order

family: Not assigned to family

genus: Lactobacilus

species: Lactobacilus nuruki

strain designation: SYF10-1a

type strain: yes

Morphology

cell morphology

  • @ref: 66698
  • gram stain: positive
  • cell length: 1.7-2.7 µm
  • cell width: 0.7-0.8 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 66698
  • colony color: white
  • colony shape: circular
  • medium used: MRS

Culture and growth conditions

culture medium

  • @ref: 66698
  • name: MRS
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66698positiveoptimum37mesophilic
66698positivegrowth4-40

culture pH

@refabilitytypepHPH range
66698positiveoptimum7
66698positivegrowth3.0-9.0alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 66698
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 66698
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
66698NaClpositivegrowth0-5 %(w/v)
66698NaClpositiveoptimum0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6669815443inulin-builds acid from
6669815963ribitol-builds acid from
6669816634raffinose-builds acid from
6669816813galactitol-builds acid from
6669816899D-mannitol-builds acid from
6669817108D-arabinose-builds acid from
6669817113erythritol-builds acid from
6669817151xylitol-builds acid from
6669817266L-sorbose-builds acid from
6669817268myo-inositol-builds acid from
6669817754glycerol-builds acid from
6669817924D-sorbitol-builds acid from
6669818287L-fucose-builds acid from
6669818333D-arabitol-builds acid from
6669818403L-arabitol-builds acid from
6669827613amygdalin-builds acid from
6669828053melibiose-builds acid from
6669828847D-fucose-builds acid from
6669830849L-arabinose-builds acid from
6669832032potassium gluconate-builds acid from
6669843943methyl alpha-D-mannoside-builds acid from
6669862318D-lyxose-builds acid from
6669862345L-rhamnose-builds acid from
6669865327D-xylose-builds acid from
6669865328L-xylose-builds acid from
6669874863methyl beta-D-xylopyranoside-builds acid from
66698potassium 2-dehydro-D-gluconate-builds acid from
66698potassium 5-dehydro-D-gluconate-builds acid from
666986731melezitose+builds acid from
6669812936D-galactose+builds acid from
6669815824D-fructose+builds acid from
6669816024D-mannose+builds acid from
6669816443D-tagatose+builds acid from
6669816988D-ribose+builds acid from
6669817057cellobiose+builds acid from
6669817306maltose+builds acid from
6669817634D-glucose+builds acid from
6669817716lactose+builds acid from
6669817814salicin+builds acid from
6669817992sucrose+builds acid from
6669818305arbutin+builds acid from
6669827082trehalose+builds acid from
6669828017starch+builds acid from
6669828066gentiobiose+builds acid from
6669828087glycogen+builds acid from
6669832528turanose+builds acid from
6669859640N-acetylglucosamine+builds acid from
66698320061methyl alpha-D-glucopyranoside+builds acid from
66698esculin ferric citrate+builds acid from
6669815318xanthine-hydrolysis
6669816991dna-hydrolysis
6669817029chitin-hydrolysis
6669817368hypoxanthine-hydrolysis
6669818186tyrosine-hydrolysis
6669853426tween 80-hydrolysis
6669885146carboxymethylcellulose-hydrolysis
66698casein-hydrolysis

metabolite production

  • @ref: 66698
  • Chebi-ID: 24996
  • metabolite: lactate
  • production: yes

enzymes

@refvalueactivityec
666986-phospho-beta-galactosidase-3.2.1.85
66698alkaline phosphatase-3.1.3.1
66698alpha-chymotrypsin-3.4.21.1
66698alpha-fucosidase-3.2.1.51
66698alpha-galactosidase-3.2.1.22
66698alpha-mannosidase-3.2.1.24
66698beta-glucuronidase-3.2.1.31
66698catalase-1.11.1.6
66698cystine arylamidase-3.4.11.3
66698cytochrome oxidase-1.9.3.1
66698esterase (C 4)-
66698esterase Lipase (C 8)-
66698lipase (C 14)-
66698N-acetyl-beta-glucosaminidase-3.2.1.52
66698trypsin-3.4.21.4
66698acid phosphatase+3.1.3.2
66698alpha-glucosidase+3.2.1.20
66698beta-glucosidase+3.2.1.21
66698leucine arylamidase+3.4.11.1
66698naphthol-AS-BI-phosphohydrolase+
66698valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    66698C19:0 w8c cyclo / C19:1 w6c / ECL 18.8466.218.846
    66698C18:1 w9c15.4
    66698C15:0 iso 2OH / C16:1 w7c15.6
    66698C16:022.6
    66698C18:1 w7c32.8
    66698C14:07.6
  • type of FA analysis: whole cell analysis
  • incubation medium: MRS
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 3
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6.1
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 66698
  • sample type: Nuruk. A Korean fermentation starter
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • enrichment culture: de Man Rogosa and Sharpe agar
  • enrichment culture composition: supplemented with cycloheximide (200 µg ml-1)
  • enrichment culture duration: 3 days
  • enrichment culture temperature: 30
  • isolation procedure: A nuruk sample was transferred into a sterile homogenization bag, and the homogenate was serially diluted and spread on de Man Rogosa and Sharpe agar supplemented with cycloheximide (200 µg ml-1). The medium was incubated at 30°C for 3 days.

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_1676.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_954;97_1113;98_1324;99_1676&stattab=map
  • Last taxonomy: Companilactobacillus
  • 16S sequence: MG786754
  • Sequence Identity:
  • Total samples: 4649
  • soil counts: 475
  • aquatic counts: 523
  • animal counts: 3246
  • plant counts: 405

Sequence information

16S sequences

  • @ref: 66698
  • description: Lactobacillus sp. strain SYF10-1a 16S ribosomal RNA gene, partial sequence
  • accession: MG786754
  • length: 1567
  • database: ena
  • NCBI tax ID: 1993540

GC content

  • @ref: 66698
  • GC-content: 34.2
  • method: genome sequence analysis

External links

@ref: 66698

culture collection no.: KACC 18726, NBRC 112011

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66698Jun Heo, Satomi Saitou, Tomohiko Tamua, Hayoung Cho, Ji-Seon Kim, Jae-Ho Joa, Jeong-Seon Kim, Soon-Wo Kwon, Soo-Jin KimLactobacilus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter10.1099/ijsem.0.002976IJSEM 68: 3273-3278 201830156528
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/