Strain identifier

BacDive ID: 159693

Type strain: Yes

Species: Streptomyces cahuitamycinicus

Strain Designation: 13K301

Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; 13K301

NCBI tax ID(s): 2070367 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 66544

BacDive-ID: 159693

DSM-Number: 106873

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces cahuitamycinicus 13K301 is a mesophilic bacterium that builds an aerial mycelium and was isolated from Desert soil.

NCBI tax id

  • NCBI tax id: 2070367
  • Matching level: species

strain history

  • @ref: 66544
  • history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; 13K301

doi: 10.13145/bacdive159693.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cahuitamycinicus
  • full scientific name: Streptomyces cahuitamycinicus Saygin et al. 2020

@ref: 66544

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cahuitamycinicus

full scientific name: Streptomyces cahuitamycinicus Saygin et al, 2020.

strain designation: 13K301

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69329Brown grey (7013), sepia brown (8014)suter with tyrosine
69329Beige (1001)ISP 2
69329Beige (1001)suter without tyrosine
69329Ivory (1014)ISP 4
69329Light ivory (1015), ochre yellow (1024)ISP 6
69329Moss grey (7003)ISP 7
69329Oyster white (1013)ISP 3
69329Oyster white (1013)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69329yesAerial myceliumSignal white (9003)ISP 2
69329yesAerial myceliumSignal white (9003)ISP 3
69329noAerial myceliumISP 4
69329yesAerial myceliumSignal white (9003)ISP 5
69329noAerial myceliumISP 6
69329yesAerial myceliumGrey white (9002)ISP 7
69329yesAerial myceliumGrey white (9002)suter with tyrosine
69329noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69329yesMelanin
69329yessoluble pigmentSalmon pink (3022), brown beige (1011), beige red (3012), green brown (8000), ochre brown (8001), jet black (9005)

multimedia

  • @ref: 66544
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106873.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66544ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
66544STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
66544GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
66544GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 66544
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69329
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6932922599arabinose+growth
6932962968cellulose+growth
6932928757fructose+growth
6932917234glucose+growth
6932917268inositol+growth
6932937684mannose+growth
6932916634raffinose+growth
6932926546rhamnose+growth
6932917992sucrose+growth
6932918222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69329--++-+-+--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69329++++++/-+/-++++-+-+/--++-

Isolation, sampling and environmental information

isolation

  • @ref: 66544
  • sample type: Desert soil
  • geographic location: Askabat (38° 25' 48'' N, 58° 29' 38'' E)
  • country: Turkmenistan
  • origin.country: TKM
  • continent: Asia
  • latitude: 38.43
  • longitude: 58.4939

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

Sequence information

16S sequences

  • @ref: 66544
  • description: Streptomyces sp. strain 13K301 16S ribosomal RNA gene, partial sequence
  • accession: MG770843
  • length: 1489
  • database: ena
  • NCBI tax ID: 1931

Genome sequences

  • @ref: 66792
  • description: Streptomyces cahuitamycinicus 13K301
  • accession: GCA_002891435
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2070367

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.151no
gram-positiveyes88.171no
anaerobicno98.785no
aerobicyes91.384no
halophileno91.853no
spore-formingyes95.16no
thermophileno99.05yes
glucose-utilyes90.615yes
motileno93.997no
glucose-fermentno90.745no

External links

@ref: 66544

culture collection no.: DSM 106873, KCTC 49110

straininfo link

  • @ref: 112163
  • straininfo: 397910

literature

  • topic: Phylogeny
  • Pubmed-ID: 32176603
  • title: Streptomyces cahuitamycinicus sp. nov., isolated from desert soil and reclassification of Streptomyces galilaeus as a later heterotypic synonym of Streptomyces bobili.
  • authors: Saygin H, Ay H, Guven K, Cetin D, Sahin N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004103
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66544Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106873Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106873)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69329Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%20106873.pdf
112163Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397910.1