Strain identifier

BacDive ID: 159681

Type strain: Yes

Species: Rhizobium aquaticum

Strain Designation: SA-276

Strain history: T. Felföldi; Eötvös Loránd Univ., Hungary; SA-276.

NCBI tax ID(s): 1549636 (species)

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General

@ref: 66532

BacDive-ID: 159681

DSM-Number: 29780

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic

description: Rhizobium aquaticum SA-276 is a psychrophilic bacterium that was isolated from crater lake.

NCBI tax id

  • NCBI tax id: 1549636
  • Matching level: species

strain history

@refhistory
66532<- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; SA-276
67770T. Felföldi; Eötvös Loránd Univ., Hungary; SA-276.

doi: 10.13145/bacdive159681.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Rhizobium
  • species: Rhizobium aquaticum
  • full scientific name: Rhizobium aquaticum Máthé et al. 2019

@ref: 66532

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhizobiaceae

genus: Rhizobium

species: Rhizobium aquaticum

full scientific name: Rhizobium aquaticum Máthé et al. 2019

strain designation: SA-276

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 66532
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
66532positivegrowth20psychrophilic
67770positivegrowth21psychrophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-10, Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
66532----++-++-+++++/--+/-++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
66532crater lakeLake St. AnaRomaniaROUEurope
67770Water of Lake St. Ana, a crater lake in the Ciomad MountainsHarghita CountyRomaniaROUEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Lake (large)

Sequence information

16S sequences

  • @ref: 66532
  • description: Rhizobium aquaticum strain SA-276 16S ribosomal RNA gene, partial sequence
  • accession: KM083136
  • length: 1408
  • database: ena
  • NCBI tax ID: 1549636

Genome sequences

  • @ref: 66792
  • description: Rhizobium aquaticum DSM 29780
  • accession: 2928412209
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1549636

GC content

  • @ref: 67770
  • GC-content: 60.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 66532

culture collection no.: DSM 29780, JCM 31760

straininfo link

  • @ref: 112152
  • straininfo: 396737

literature

  • topic: Phylogeny
  • Pubmed-ID: 29881978
  • title: A new Rhizobium species isolated from the water of a crater lake, description of Rhizobium aquaticum sp. nov.
  • authors: Mathe I, Toth E, Mentes A, Szabo A, Marialigeti K, Schumann P, Felfoldi T
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-018-1110-0
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Lakes/*microbiology, Phylogeny, Rhizobium/classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66532Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29780Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29780)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
112152Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396737.1