Strain identifier
BacDive ID: 159677
Type strain: 
Species: Actinoallomurus sp.
Strain Designation: RS-52
Strain history: <- S. D. Lee, Jeju National Univ., Rep. of Korea; RS-52
NCBI tax ID(s): 1872127 (species)
version 9.2 (current version)
General
@ref: 66528
BacDive-ID: 159677
DSM-Number: 45798
keywords: 16S sequence, Bacteria, mesophilic
description: Actinoallomurus sp. RS-52 is a mesophilic bacterium that was isolated from rhizosphere soil.
NCBI tax id
- NCBI tax id: 1872127
- Matching level: species
strain history
- @ref: 66528
- history: <- S. D. Lee, Jeju National Univ., Rep. of Korea; RS-52
doi: 10.13145/bacdive159677.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus sp.
- full scientific name: Actinoallomurus Tamura et al. 2009
@ref: 66528
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus sp.
full scientific name: Actinoallomurus sp.
strain designation: RS-52
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66528 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf | |
| 66528 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
culture temp
- @ref: 66528
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 66528
- sample type: rhizosphere soil
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host Body-Site | #Plant | #Rhizosphere |
| #Host | #Plants |
taxonmaps
- @ref: 69479
- File name: preview.99_58451.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_6498;98_8091;99_58451&stattab=map
- Last taxonomy: Actinoallomurus
- 16S sequence: FM998039
- Sequence Identity:
- Total samples: 378
- soil counts: 372
- aquatic counts: 3
- plant counts: 3
Sequence information
16S sequences
- @ref: 66528
- description: Actinomadura sp. RS-52 partial 16S rRNA gene, strain RS-52
- accession: FM998039
- length: 1428
- database: nuccore
- NCBI tax ID: 598646
External links
@ref: 66528
culture collection no.: DSM 45798
straininfo link
- @ref: 112148
- straininfo: 401140
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66528 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45798 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45798) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112148 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401140.1 |