Strain identifier
BacDive ID: 159659
Type strain: 
Species: Pseudomonas laurylsulfativorans
Strain Designation: AP3_22
Strain history: <- E. Furmanczyk; Institute of Biochemistry and Biophysics ,Polish Academy of Sciences, Warsaw, POLAND; AP3_22
NCBI tax ID(s): 1943631 (species)
version 9.3 (current version)
General
@ref: 66509
BacDive-ID: 159659
DSM-Number: 105098
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Pseudomonas laurylsulfativorans AP3_22 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1943631
- Matching level: species
strain history
- @ref: 66509
- history: <- E. Furmanczyk; Institute of Biochemistry and Biophysics ,Polish Academy of Sciences, Warsaw, POLAND; AP3_22
doi: 10.13145/bacdive159659.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas laurylsulfativorans
- full scientific name: Pseudomonas laurylsulfativorans corrig. Furmanczyk et al. 2019
synonyms
- @ref: 20215
- synonym: Pseudomonas laurylsulfatovorans
@ref: 66509
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas laurylsulfativorans
full scientific name: Pseudomonas laurylsulfativorans Furmanczyk et al. 2019
strain designation: AP3_22
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 98 | |
| 125438 | 93.457 | yes | |
| 125438 | negative | 98.5 |
multimedia
- @ref: 66509
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105098.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66509 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 66509 | MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462) | yes | https://mediadive.dsmz.de/medium/462 | Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water |
culture temp
- @ref: 66509
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 93.342 |
| 125439 | obligate aerobe | 94 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.7
Isolation, sampling and environmental information
isolation
- @ref: 66509
- sample type: soil
- geographic location: Jaworzno (50.215° N, 19.234167° E)
- country: Poland
- origin.country: POL
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_444.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_444&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: MF554631
- Sequence Identity:
- Total samples: 636
- soil counts: 197
- aquatic counts: 124
- animal counts: 162
- plant counts: 153
Sequence information
16S sequences
- @ref: 66509
- description: Pseudomonas laurylsulfativorans strain AP3_22 16S ribosomal RNA gene, partial sequence
- accession: MF554631
- length: 1499
- database: nuccore
- NCBI tax ID: 1943631
Genome sequences
- @ref: 66792
- description: Pseudomonas laurylsulfativorans AP3_22
- accession: GCA_002906155
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1943631
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.362 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 93.342 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.819 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 93.457 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 83.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94 |
External links
@ref: 66509
culture collection no.: DSM 105098, PCM 2904
straininfo link
- @ref: 112133
- straininfo: 402942
literature
- topic: Phylogeny
- Pubmed-ID: 29752019
- title: Pseudomonas laurylsulfatovorans sp. nov., sodium dodecyl sulfate degrading bacteria, isolated from the peaty soil of a wastewater treatment plant.
- authors: Furmanczyk EM, Kaminski MA, Lipinski L, Dziembowski A, Sobczak A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.03.009
- year: 2018
- mesh: Base Composition, Biodegradation, Environmental, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Essential/genetics, Molecular Typing, Phylogeny, *Pseudomonas/classification/genetics/isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Dodecyl Sulfate/*metabolism, Soil/chemistry, Soil Microbiology, Waste Water/*microbiology, *Water Purification
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66509 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105098 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105098) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112133 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402942.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |