Strain identifier
BacDive ID: 159627
Type strain:
Species: Mycolicibacterium stellerae
Strain Designation: I10A-01893
Strain history: <- Y.-Q. Zhang, Inst. of Medicinal Biotechnology, Beijing, China; I10A-01893 <- H.-J. Du
NCBI tax ID(s): 2358193 (species)
General
@ref: 66462
BacDive-ID: 159627
DSM-Number: 45590
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Mycolicibacterium stellerae I10A-01893 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Stellera chamaejasme L..
NCBI tax id
- NCBI tax id: 2358193
- Matching level: species
strain history
- @ref: 66462
- history: <- Y.-Q. Zhang, Inst. of Medicinal Biotechnology, Beijing, China; I10A-01893 <- H.-J. Du
doi: 10.13145/bacdive159627.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycolicibacterium
- species: Mycolicibacterium stellerae
- full scientific name: Mycolicibacterium stellerae Nouioui et al. 2019
@ref: 66462
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycolicibacterium
species: Mycolicibacterium stellerae
full scientific name: Mycolicibacterium stellerae Nouioui et al. 2019
strain designation: I10A-01893
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence |
---|---|---|
68038 | positive | |
69480 | positive | 100 |
colony morphology
@ref | colony color | medium used | incubation period |
---|---|---|---|
68038 | orange | MB7H10 | |
68038 | 5 days |
Culture and growth conditions
culture medium
- @ref: 66462
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
66462 | positive | growth | 28 | mesophilic |
68038 | positive | growth | 25-37 | mesophilic |
68038 | positive | optimum | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 68038
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.485
observation
@ref | observation |
---|---|
68038 | Whole-cell hydrolysates contain meso-diaminopimelic acid and arabinose, galactose, glucose, mannose and ribose |
68038 | the polar lipid profile consists of diphosphatidylglycerol, a glycophospholipid, phosphatidyethanolamine, phosphatidylinositol, an aminoglycolipid, a phospholipid, three unidentified glycolipids and two unidentified lipids |
68038 | acid-alcohol-fast, fastgrowing organism |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68038 | 75248 | potassium tellurite | + | reduction |
68038 | 53426 | tween 80 | - | reduction |
68038 | 16199 | urea | - | hydrolysis |
68038 | 16763 | 2-oxobutanoate | - | carbon source |
68038 | 13705 | acetoacetate | - | carbon source |
68038 | 32323 | glucuronamide | - | carbon source |
68038 | 53423 | tween 40 | - | carbon source |
68038 | 17306 | maltose | + | carbon source |
68038 | 16551 | D-trehalose | + | carbon source |
68038 | 17057 | cellobiose | + | carbon source |
68038 | 28066 | gentiobiose | - | carbon source |
68038 | 17992 | sucrose | + | carbon source |
68038 | 32528 | turanose | + | carbon source |
68038 | 17164 | stachyose | - | carbon source |
68038 | 16634 | raffinose | - | carbon source |
68038 | 36219 | alpha-lactose | - | carbon source |
68038 | 28053 | melibiose | - | carbon source |
68038 | 320055 | methyl beta-D-glucopyranoside | - | carbon source |
68038 | 17814 | salicin | - | carbon source |
68038 | 59640 | N-acetylglucosamine | - | carbon source |
68038 | 63153 | N-acetyl-D-mannosamine | - | carbon source |
68038 | 28800 | N-acetylgalactosamine | - | carbon source |
68038 | 35418 | n-acetylneuraminate | - | carbon source |
68038 | 17925 | alpha-D-glucose | - | carbon source |
68038 | 16024 | D-mannose | - | carbon source |
68038 | 15824 | D-fructose | - | carbon source |
68038 | 12936 | D-galactose | - | carbon source |
68038 | 73918 | 3-O-methyl-D-glucose | - | carbon source |
68038 | 28847 | D-fucose | - | carbon source |
68038 | 18287 | L-fucose | - | carbon source |
68038 | 62345 | L-rhamnose | - | carbon source |
68038 | 17596 | inosine | - | carbon source |
68038 | 17924 | D-sorbitol | - | carbon source |
68038 | 16899 | D-mannitol | - | carbon source |
68038 | 18333 | D-arabitol | - | carbon source |
68038 | 17268 | myo-inositol | - | carbon source |
68038 | 17754 | glycerol | + | carbon source |
68038 | 14314 | D-glucose 6-phosphate | - | carbon source |
68038 | 78697 | D-fructose 6-phosphate | - | carbon source |
68038 | 29990 | D-aspartate | - | carbon source |
68038 | 16523 | D-serine | + | carbon source |
68038 | 5291 | gelatin | - | carbon source |
68038 | 70744 | glycine-proline | - | carbon source |
68038 | 16977 | L-alanine | - | carbon source |
68038 | 16467 | L-arginine | + | carbon source |
68038 | 29991 | L-aspartate | + | carbon source |
68038 | 29988 | L-glutamate | + | carbon source |
68038 | 15971 | L-histidine | - | carbon source |
68038 | 57606 | L-pyroglutamate | + | carbon source |
68038 | 17115 | L-serine | - | carbon source |
68038 | 17309 | pectin | + | carbon source |
68038 | 18024 | D-galacturonic acid | - | carbon source |
68038 | 17464 | L-galactonic acid gamma-lactone | - | carbon source |
68038 | 8391 | D-gluconate | - | carbon source |
68038 | 15748 | D-glucuronate | - | carbon source |
68038 | 16537 | galactarate | - | carbon source |
68038 | 26490 | quinate | - | carbon source |
68038 | 30612 | D-glucarate | - | carbon source |
68038 | 18101 | 4-hydroxyphenylacetic acid | + | carbon source |
68038 | 51850 | methyl pyruvate | + | carbon source |
68038 | 74611 | methyl (R)-lactate | - | carbon source |
68038 | 16651 | (S)-lactate | - | carbon source |
68038 | 16947 | citrate | - | carbon source |
68038 | 16810 | 2-oxoglutarate | - | carbon source |
68038 | 30796 | (R)-malic acid | + | carbon source |
68038 | 30797 | (S)-malic acid | + | carbon source |
68038 | 73706 | bromosuccinate | - | carbon source |
68038 | 16865 | gamma-aminobutyric acid | - | carbon source |
68038 | 64552 | 2-hydroxybutyrate | + | carbon source |
68038 | 37054 | 3-hydroxybutyrate | - | carbon source |
68038 | 17272 | propionate | - | carbon source |
68038 | 16411 | acetic acid | - | carbon source |
68038 | 15740 | formate | - | carbon source |
enzymes
- @ref: 68038
- value: arylsulfatase
- activity: -
- ec: 3.1.6.1
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
66462 | Stellera chamaejasme L. | Stellera chamaejasme | Yunnan | China | CHN | Asia |
68038 | Stellera chamaejasme | Yunnan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Sequence information
16S sequences
- @ref: 66462
- description: Mycolicibacterium sp. strain CECT8783 16S ribosomal RNA gene, partial sequence
- accession: MH935827
- length: 1533
- database: ena
- NCBI tax ID: 2320850
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium sp. CECT 8783 | 2358193.3 | wgs | patric | 2358193 |
66792 | Mycolicibacterium sp. CECT 8783 | 2866428463 | draft | img | 2358193 |
68038 | Mycolicibacterium stellerae CECT 8783 | GCA_003719305 | contig | ncbi | 2358193 |
GC content
@ref | GC-content | method |
---|---|---|
66462 | 65.8 | sequence analysis |
68038 | 65.8 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 85 | no |
motile | no | 92.354 | no |
gram-positive | yes | 90.123 | no |
anaerobic | no | 99.129 | yes |
aerobic | yes | 90.928 | yes |
halophile | no | 94.102 | no |
spore-forming | no | 85.276 | no |
glucose-util | yes | 84.132 | no |
flagellated | no | 98.105 | no |
thermophile | no | 99.136 | yes |
glucose-ferment | no | 91.121 | no |
External links
@ref: 66462
culture collection no.: DSM 45590, CECT 8783, KCTC 19843
straininfo link
- @ref: 112101
- straininfo: 407462
literature
- topic: Phylogeny
- Pubmed-ID: 31460855
- title: Mycolicibacterium stellerae sp. nov., a rapidly growing scotochromogenic strain isolated from Stellera chamaejasme.
- authors: Nouioui I, Sangal V, Cortes-Albayay C, Jando M, Igual JM, Klenk HP, Zhang YQ, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003644
- year: 2019
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thymelaeaceae/*microbiology
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
66462 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45590 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45590) | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
68038 | Imen Nouioui, Vartul Sangal, Carlos Cortés-Albayay, Marlen Jando, José Mariano Igual, Hans-Peter Klenk, Yu-Qin Zhang, Michael Goodfellow | Mycolicibacterium stellerae sp. nov., a rapidly growing scotochromogenic strain isolated from Stellera chamaejasme | 10.1099/ijsem.0.003644 | IJSEM 69: 3465-3471 2019 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
112101 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407462.1 |