Workshop and Q&A October 6th

Strain identifier

BacDive ID: 159627

Type strain: Yes

Species: Mycolicibacterium stellerae

Strain Designation: I10A-01893

Strain history: <- Y.-Q. Zhang, Inst. of Medicinal Biotechnology, Beijing, China; I10A-01893 <- H.-J. Du

NCBI tax ID(s): 2358193 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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version 7 (current version)

General

@ref: 66462

BacDive-ID: 159627

DSM-Number: 45590

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, Gram-positive

description: Mycolicibacterium stellerae I10A-01893 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Stellera chamaejasme L..

NCBI tax id

  • NCBI tax id: 2358193
  • Matching level: species

strain history: <- Y.-Q. Zhang, Inst. of Medicinal Biotechnology, Beijing, China; I10A-01893 <- H.-J. Du

doi: 10.13145/bacdive159627.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycolicibacterium
  • species: Mycolicibacterium stellerae
  • full scientific name: Mycolicibacterium stellerae Nouioui et al. 2019

@ref: 66462

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycolicibacterium

species: Mycolicibacterium stellerae

full scientific name: Mycolicibacterium stellerae Nouioui et al. 2019

strain designation: I10A-01893

type strain: yes

Morphology

cell morphology

  • @ref: 68038
  • gram stain: positive

colony morphology

@refcolony colormedium usedincubation period
68038orangeMB7H10
680385 days

Culture and growth conditions

culture medium

  • @ref: 66462
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
66462positivegrowth28mesophilic
68038positivegrowth25-37mesophilic
68038positiveoptimum37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 68038
  • oxygen tolerance: aerobe

observation

@refobservation
68038Whole-cell hydrolysates contain meso-diaminopimelic acid and arabinose, galactose, glucose, mannose and ribose
68038the polar lipid profile consists of diphosphatidylglycerol, a glycophospholipid, phosphatidyethanolamine, phosphatidylinositol, an aminoglycolipid, a phospholipid, three unidentified glycolipids and two unidentified lipids
68038acid-alcohol-fast, fastgrowing organism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6803875248potassium tellurite+reduction
6803853426tween 80-reduction
6803816199urea-hydrolysis
68038167632-oxobutanoate-carbon source
6803813705acetoacetate-carbon source
6803832323glucuronamide-carbon source
6803853423tween 40-carbon source
6803817306maltose+carbon source
6803816551D-trehalose+carbon source
6803817057cellobiose+carbon source
6803828066gentiobiose-carbon source
6803817992sucrose+carbon source
6803832528turanose+carbon source
6803817164stachyose-carbon source
6803816634raffinose-carbon source
6803836219alpha-lactose-carbon source
6803828053melibiose-carbon source
68038320055methyl beta-D-glucopyranoside-carbon source
6803817814salicin-carbon source
6803859640N-acetylglucosamine-carbon source
6803863153N-acetyl-D-mannosamine-carbon source
6803828800N-acetylgalactosamine-carbon source
6803835418n-acetylneuraminate-carbon source
6803817925alpha-D-glucose-carbon source
6803816024D-mannose-carbon source
6803815824D-fructose-carbon source
6803812936D-galactose-carbon source
68038739183-O-methyl-D-glucose-carbon source
6803828847D-fucose-carbon source
6803818287L-fucose-carbon source
6803862345L-rhamnose-carbon source
6803817596inosine-carbon source
6803817924D-sorbitol-carbon source
6803816899D-mannitol-carbon source
6803818333D-arabitol-carbon source
6803817268myo-inositol-carbon source
6803817754glycerol+carbon source
6803814314D-glucose 6-phosphate-carbon source
6803878697D-fructose 6-phosphate-carbon source
6803829990D-aspartate-carbon source
6803816523D-serine+carbon source
680385291gelatin-carbon source
6803870744glycine-proline-carbon source
6803816977L-alanine-carbon source
6803816467L-arginine+carbon source
6803829991L-aspartate+carbon source
6803829988L-glutamate+carbon source
6803815971L-histidine-carbon source
6803857606L-pyroglutamate+carbon source
6803817115L-serine-carbon source
6803817309pectin+carbon source
6803818024D-galacturonic acid-carbon source
6803817464L-galactonic acid gamma-lactone-carbon source
680388391D-gluconate-carbon source
6803815748D-glucuronate-carbon source
6803816537galactarate-carbon source
6803826490quinate-carbon source
6803830612D-glucarate-carbon source
68038181014-hydroxyphenylacetic acid+carbon source
6803851850methyl pyruvate+carbon source
6803874611methyl (R)-lactate-carbon source
6803816651(S)-lactate-carbon source
6803816947citrate-carbon source
68038168102-oxoglutarate-carbon source
6803830796(R)-malic acid+carbon source
6803830797(S)-malic acid+carbon source
6803873706bromosuccinate-carbon source
6803816865gamma-aminobutyric acid-carbon source
68038645522-hydroxybutyrate+carbon source
68038370543-hydroxybutyrate-carbon source
6803817272propionate-carbon source
6803816411acetic acid-carbon source
6803815740formate-carbon source

enzymes

  • @ref: 68038
  • value: arylsulfatase
  • activity: -
  • ec: 3.1.6.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
66462Stellera chamaejasme L.Stellera chamaejasmeYunnanChinaCHNAsia
68038Stellera chamaejasmeYunnan ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Sequence information

16S sequences

  • @ref: 66462
  • description: Mycolicibacterium sp. strain CECT8783 16S ribosomal RNA gene, partial sequence
  • accession: MH935827
  • length: 1533
  • database: ena
  • NCBI tax ID: 2320850

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium sp. CECT 8783 CECT 8783GCA_003719305contigncbi2358193
66792Mycolicibacterium sp. CECT 87832358193.3wgspatric2358193
66792Mycolicibacterium sp. CECT 87832866428463draftimg2358193
68038Mycolicibacterium sp. CECT 8783, whole genome shotgun sequencing projectRARC00000000ncbi2358193

GC content

@refGC-contentmethod
6646265.8sequence analysis
6803865.8genome sequence analysis

External links

@ref: 66462

culture collection no.: DSM 45590, CECT 8783, KCTC 19843

literature

  • topic: Phylogeny
  • Pubmed-ID: 31460855
  • title: Mycolicibacterium stellerae sp. nov., a rapidly growing scotochromogenic strain isolated from Stellera chamaejasme.
  • authors: Nouioui I, Sangal V, Cortes-Albayay C, Jando M, Igual JM, Klenk HP, Zhang YQ, Goodfellow M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003644
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thymelaeaceae/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66462Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45590Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45590)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68038Imen Nouioui, Vartul Sangal, Carlos Cortés-Albayay, Marlen Jando, José Mariano Igual, Hans-Peter Klenk, Yu-Qin Zhang, Michael GoodfellowMycolicibacterium stellerae sp. nov., a rapidly growing scotochromogenic strain isolated from Stellera chamaejasme10.1099/ijsem.0.003644IJSEM 69: 3465-3471 2019