Strain identifier
BacDive ID: 159621
Type strain: 
Species: Rubrivivax pictus
Strain Designation: W35
Strain history: <- S. Hanada, Tokyo Metropolitan University, Hachioji, Japan; W35 <- S. Hirose
NCBI tax ID(s): 2315236 (species)
version 9.2 (current version)
General
@ref: 66456
BacDive-ID: 159621
DSM-Number: 106757
keywords: genome sequence, 16S sequence, Bacteria
description: Rubrivivax pictus W35 is a bacterium that was isolated from Biofilm on submerged stone in a river.
NCBI tax id
- NCBI tax id: 2315236
- Matching level: species
strain history
- @ref: 66456
- history: <- S. Hanada, Tokyo Metropolitan University, Hachioji, Japan; W35 <- S. Hirose
doi: 10.13145/bacdive159621.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Sphaerotilaceae
- genus: Rubrivivax
- species: Rubrivivax pictus
- full scientific name: Rubrivivax pictus (Hirose et al. 2020) Liu et al. 2023
synonyms
@ref synonym 20215 Aquabacterium pictum 20215 Pseudaquabacterium pictum
@ref: 66456
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Aquabacterium
species: Aquabacterium pictum
full scientific name: Aquabacterium pictum Hirose et al. 2019
strain designation: W35
type strain: yes
Morphology
multimedia
- @ref: 66456
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106757.jpg
- caption: DSM 106757 on medium 830 at 28 °C
- intellectual property rights: © Leibniz-Institut DSMZ
Isolation, sampling and environmental information
isolation
- @ref: 66456
- sample type: Biofilm on submerged stone in a river
- geographic location: Ome, Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
- latitude: 35.7869
- longitude: 139.254
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Geologic |
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Biofilm |
taxonmaps
- @ref: 69479
- File name: preview.99_12711.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_1718;97_4766;98_9585;99_12711&stattab=map
- Last taxonomy: Aquabacterium pictum subclade
- 16S sequence: LC094486
- Sequence Identity:
- Total samples: 42
- soil counts: 4
- aquatic counts: 36
- plant counts: 2
Sequence information
16S sequences
- @ref: 66456
- description: Aquabacterium pictum W35 gene for 16S ribosomal RNA
- accession: LC094486
- length: 1451
- database: nuccore
- NCBI tax ID: 2315236
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aquabacterium pictum W35 | GCA_005403045 | contig | ncbi | 2315236 |
| 66792 | Aquabacterium pictum W35 | 2887210033 | draft | img | 2315236 |
External links
@ref: 66456
culture collection no.: DSM 106757, NBRC 111963
straininfo link
- @ref: 112095
- straininfo: 400742
literature
- topic: Phylogeny
- Pubmed-ID: 31622237
- title: Aquabacterium pictum sp. nov., the first aerobic bacteriochlorophyll a-containing fresh water bacterium in the genus Aquabacterium of the class Betaproteobacteria.
- authors: Hirose S, Tank M, Hara E, Tamaki H, Mori K, Takaichi S, Haruta S, Hanada S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003798
- year: 2020
- mesh: Bacterial Typing Techniques, Bacteriochlorophyll A/*chemistry, Base Composition, Biofilms, Burkholderiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66456 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106757 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106757) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112095 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400742.1 |