Strain identifier

BacDive ID: 159604

Type strain: Yes

Species: Pseudaestuariivita atlantica

Strain Designation: 22II-S11-z3

Strain history: <- J.-S. Lee, KCTC; KCTC 42276 <- G. Li and Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; 22II-S11-z3

NCBI tax ID(s): 1317121 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 8.1 (current version)

General

@ref: 66430

BacDive-ID: 159604

DSM-Number: 110603

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Pseudaestuariivita atlantica 22II-S11-z3 is a mesophilic bacterium that was isolated from Deep sea sediment of the Atlantic Ocean.

NCBI tax id

  • NCBI tax id: 1317121
  • Matching level: species

strain history

  • @ref: 66430
  • history: <- J.-S. Lee, KCTC; KCTC 42276 <- G. Li and Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; 22II-S11-z3

doi: 10.13145/bacdive159604.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Pseudaestuariivita
  • species: Pseudaestuariivita atlantica
  • full scientific name: Pseudaestuariivita atlantica (Li et al. 2015) Wirth and Whitman 2018

  • synonyms

    • @ref: 20215
    • synonym: Aestuariivita atlantica

@ref: 66430

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Pseudaestuariivita

species: Pseudaestuariivita atlantica

full scientific name: Pseudaestuariivita atlantica (Li et al. 2015) Wirth and Whitman 2018

strain designation: 22II-S11-z3

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 66430
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 66430
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 66430
  • sample type: Deep sea sediment of the Atlantic Ocean
  • geographic location: Atlantic Ocean
  • country: International waters

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5299.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2571;97_3144;98_3947;99_5299&stattab=map
  • Last taxonomy: Pseudaestuariivita atlantica subclade
  • 16S sequence: KP742981
  • Sequence Identity:
  • Total samples: 431
  • soil counts: 16
  • aquatic counts: 397
  • animal counts: 3
  • plant counts: 15

Safety information

risk assessment

  • @ref: 66430
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66430
  • description: Aestuariivita atlantica strain 22II-S11-z3 16S ribosomal RNA gene, partial sequence
  • accession: KP742981
  • length: 1426
  • database: ena
  • NCBI tax ID: 1317121

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudaestuariivita atlantica 22II-S11-z3GCA_001205715contigncbi1317121
66792Pseudaestuariivita atlantica 22II-S11-z32645727674draftimg1317121

External links

@ref: 66430

culture collection no.: DSM 110603, KCTC 42276, MCCC 1A09432

straininfo link

  • @ref: 112080
  • straininfo: 400734

literature

  • topic: Phylogeny
  • Pubmed-ID: 26297013
  • title: Aestuariivita atlantica sp. nov., isolated from deep-sea sediment.
  • authors: Li G, Lai Q, Du Y, Liu X, Sun F, Shao Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000406
  • year: 2015
  • mesh: Atlantic Ocean, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66430Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110603Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110603)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112080Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400734.1