Strain identifier
BacDive ID: 159592
Type strain: 
Species: Streptomyces graminifolii
Strain Designation: JL-22, IMER00653
NCBI tax ID(s): 1266771 (species)
version 8.1 (current version)
General
@ref: 66418
BacDive-ID: 159592
DSM-Number: 111588
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces graminifolii JL-22 is a mesophilic bacterium that was isolated from Bamboo litter, Sasa borealis.
NCBI tax id
- NCBI tax id: 1266771
- Matching level: species
doi: 10.13145/bacdive159592.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces graminifolii
- full scientific name: Streptomyces graminifolii Lee and Whang 2014
@ref: 66418
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces graminifolii
full scientific name: Streptomyces graminifolii Lee and Whang 2014
strain designation: JL-22, IMER00653
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66418 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 66418 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 66418 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 66418
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66418
- sample type: Bamboo litter, Sasa borealis
- host species: Sasa borealis
- geographic location: Damyang
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Plant | #Plant litter (Forest) |
| #Host | #Plants | #Shrub (Scrub) |
Safety information
risk assessment
- @ref: 66418
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 66418
- description: Streptomyces graminifolii strain JL-22 16S ribosomal RNA gene, partial sequence
- accession: HQ267984
- length: 1418
- database: ena
- NCBI tax ID: 1266771
GC content
- @ref: 66418
- GC-content: 72.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 66418
culture collection no.: DSM 111588, NBRC 109806, KACC 17180
straininfo link
- @ref: 112068
- straininfo: 406426
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24812360 | Streptomyces graminifolii sp. nov., isolated from bamboo (Sasa borealis) litter. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.056895-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sasa/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 25424909 | Streptomyces seymenliensis sp. nov., isolated from soil. | Tatar D, Sahin N | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0339-5 | 2014 | Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Lakes, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Turkey, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66418 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111588 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111588) | |
| 112068 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406426.1 |