Strain identifier
BacDive ID: 159573
Type strain:
Species: Campylobacter jejuni
Strain Designation: PT14
Strain history: <- A. Coffey, Cork Institute of Technology
NCBI tax ID(s): 197 (species)
General
@ref: 66399
BacDive-ID: 159573
DSM-Number: 103838
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Campylobacter jejuni PT14 is a mesophilic, Gram-negative bacterium of the family Campylobacteraceae.
NCBI tax id
- NCBI tax id: 197
- Matching level: species
strain history
- @ref: 66399
- history: <- A. Coffey, Cork Institute of Technology
doi: 10.13145/bacdive159573.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter jejuni
- full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio jejuni
@ref: 66399
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter jejuni
full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973
strain designation: PT14
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.992
Culture and growth conditions
culture medium
- @ref: 66399
- name: NZCYM-MEDIUM (DSMZ Medium 544)
- growth: yes
- link: https://mediadive.dsmz.de/medium/544
- composition: Name: NZCYM-MEDIUM (DSMZ Medium 544) Composition: Casein hydrolysate 10.0 g/l Yeast extract 5.0 g/l NaCl 5.0 g/l Maltose 2.0 g/l MgSO4 x 7 H2O 2.0 g/l Casamino acids 1.0 g/l Distilled water
culture temp
- @ref: 66399
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.993 |
69481 | no | 100 |
Safety information
risk assessment
- @ref: 66399
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Campylobacter jejuni NCTC12662 | GCA_002024325 | complete | ncbi | 197 |
66792 | Campylobacter jejuni subsp. jejuni PT14 | GCA_000302555 | complete | ncbi | 1201032 |
66792 | Campylobacter jejuni strain NCTC12662 | 197.10112 | complete | patric | 197 |
66792 | Campylobacter jejuni subsp. jejuni PT14 | 1201032.3 | complete | patric | 1201032 |
66792 | Campylobacter jejuni NCTC12662 | 2870010118 | complete | img | 197 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 61.431 | no |
gram-positive | no | 98.93 | no |
anaerobic | no | 90.647 | no |
halophile | no | 85.267 | no |
spore-forming | no | 96.538 | no |
glucose-util | no | 87.68 | no |
aerobic | no | 94.705 | no |
glucose-ferment | no | 86.384 | no |
thermophile | no | 88.249 | yes |
motile | yes | 85.895 | no |
External links
@ref: 66399
culture collection no.: DSM 103838, NCTC 12662
straininfo link
- @ref: 112049
- straininfo: 407842
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 17387630 | Free-range layer chickens as a source of Campylobacter bacteriophage. | Loc Carrillo CM, Connerton PL, Pearson T, Connerton IF | Antonie Van Leeuwenhoek | 10.1007/s10482-007-9156-4 | 2007 | Animals, Bacteriophages/isolation & purification/*metabolism/ultrastructure, Campylobacter Infections/microbiology, Campylobacter coli/*virology, Campylobacter jejuni/*virology, Chickens/*microbiology/virology, DNA/metabolism, DNA, Viral/metabolism, Microscopy, Electron, Transmission | Enzymology |
Phylogeny | 22980913 | The isolation and characterization of Campylobacter jejuni bacteriophages from free range and indoor poultry. | Owens J, Barton MD, Heuzenroeder MW | Vet Microbiol | 10.1016/j.vetmic.2012.08.017 | 2012 | Animals, Bacteriophages/genetics/*isolation & purification/pathogenicity, Campylobacter Infections/microbiology/*veterinary/virology, Campylobacter jejuni/genetics/isolation & purification/*virology, Chickens, DNA, Viral/isolation & purification, Feces/microbiology/virology, Poultry Diseases/*microbiology/*virology | Enzymology |
Phylogeny | 25585385 | Primary isolation strain determines both phage type and receptors recognised by Campylobacter jejuni bacteriophages. | Sorensen MC, Gencay YE, Birk T, Baldvinsson SB, Jackel C, Hammerl JA, Vegge CS, Neve H, Brondsted L | PLoS One | 10.1371/journal.pone.0116287 | 2015 | Animals, Bacteriophages/*isolation & purification, Campylobacter Infections/*microbiology, Campylobacter jejuni/*isolation & purification, Chickens, Flagella, Humans | Enzymology |
Genetics | 28546493 | Whole-Genome Sequence of the Bacteriophage-Sensitive Strain Campylobacter jejuni NCTC12662. | Gencay YE, Sorensen MCH, Brondsted L | Genome Announc | 10.1128/genomeA.00409-17 | 2017 | ||
29467727 | Phase Variable Expression of a Single Phage Receptor in Campylobacter jejuni NCTC12662 Influences Sensitivity Toward Several Diverse CPS-Dependent Phages. | Gencay YE, Sorensen MCH, Wenzel CQ, Szymanski CM, Brondsted L | Front Microbiol | 10.3389/fmicb.2018.00082 | 2018 | |||
Phylogeny | 35336892 | Campylobacter jejuni Developed the Resistance to Bacteriophage CP39 by Phase Variable Expression of 06875 Encoding the CGPTase. | Tang Y, Li J, Wang Y, Song Z, Ying H, Kong L, Jiao X, Huang J | Viruses | 10.3390/v14030485 | 2022 | *Bacteriophages/genetics, *Campylobacter jejuni/genetics, Phylogeny, Transferases (Other Substituted Phosphate Groups) |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66399 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103838 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103838) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
112049 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407842.1 |